Lineage for d2hofb2 (2hof B:130-341)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2999834Fold d.163: DNA breaking-rejoining enzymes [56348] (1 superfamily)
    core: alpha3-beta3-alpha4; one side of beta-sheet is exposed
  4. 2999835Superfamily d.163.1: DNA breaking-rejoining enzymes [56349] (2 families) (S)
  5. 2999836Family d.163.1.1: Lambda integrase-like, catalytic core [56350] (6 proteins)
  6. 2999837Protein Cre recombinase [56355] (1 species)
  7. 2999838Species Bacteriophage P1 [TaxId:10678] [56356] (20 PDB entries)
    Uniprot P06956 20-341
  8. 2999870Domain d2hofb2: 2hof B:130-341 [147316]
    Other proteins in same PDB: d2hofa1, d2hofb1
    automated match to d1f44a2
    protein/DNA complex

Details for d2hofb2

PDB Entry: 2hof (more details), 2.4 Å

PDB Description: crystal structure of the pre-cleavage synaptic complex in the cre-loxp site-specific recombination
PDB Compounds: (B:) Recombinase cre

SCOPe Domain Sequences for d2hofb2:

Sequence, based on SEQRES records: (download)

>d2hofb2 d.163.1.1 (B:130-341) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
rakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtd
ggrmlihigrtatlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaa
psatsqlstralegifeathrliygakddsgqrylawsghsarvgaardmaragvsipei
mqaggwtnvnivmnyirnldsetgamvrlled

Sequence, based on observed residues (ATOM records): (download)

>d2hofb2 d.163.1.1 (B:130-341) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
rakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtd
ggrmlihigrtatlvstagvekalslgvtklverwisvsgvaddpnnylfcrvrkngvaa
psatsqlstralegifeathrliygakddsgqrylawsghsarvgaardmaragvsipei
mqaggwtnvnivmnyirnamvrlled

SCOPe Domain Coordinates for d2hofb2:

Click to download the PDB-style file with coordinates for d2hofb2.
(The format of our PDB-style files is described here.)

Timeline for d2hofb2:

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Domains from same chain:
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d2hofb1