SCOPe 2.07: Domain d2fdma1: 2fdm A:1-239,A:308-362

Lineage for d2fdma1 (2fdm A:1-239,A:308-362)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.5: Type II chitinase [51534] (15 proteins)
   glycosylase family 18

6. Protein Signal processing protein (SPC-40, MGP-40) [89480] (5 species)
   secreted during involution

7. Species Sheep (Ovis aries) [TaxId:9940] [109611] (17 PDB entries)
   Uniprot Q6TMG6

8. Domain d2fdma1: 2fdm A:1-239,A:308-362 [147022]
   Other proteins in same PDB: d2fdma2
   automatically matched to d1ljya1

Details for d2fdma1

PDB Entry: 2fdm, 3 Å

PDB Description: crystal structure of the ternary complex of signalling glycoprotein frm sheep (sps-40)with hexasaccharide (nag6) and peptide trp-pro-trp at 3.0a resolution

PDB Compounds: (A:) Chitinase-3-like protein 1

SCOPe Domain Sequences for d2fdma1:

Sequence; same for both SEQRES and ATOM records:

>d2fdma1 c.1.8.5 (A:1-239,A:308-362) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
yklicyytswsqyregdgscfpdaidpflcthviysfanisnneidtwewndvtlydtln
tlknrnpklktllsvggwnfgperfsaiasktqsrrtfiksvppflrthgfdgldlawly
pgrrdkrhlttlvkemkaefireaqagteqlllsaavsagkiaidrgydiaqisrhldfi
slltydfhgawrqtvghhsplfagnedassrfsnadyavsymlrlgapanklvmgiptXd
dqesvknkarylknrqlagamvwaldlddfrgtfcgqnltfpltsavkdvlaev

Timeline for d2fdma1:

• d2fdma1 first appeared in SCOP 1.75
  
• d2fdma1 appears in SCOPe 2.06
  
• d2fdma1 appears in the current release, SCOPe 2.08