SCOPe 2.08: Domain d2dcfa1: 2dcf A:5-392

Lineage for d2dcfa1 (2dcf A:5-392)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
   contains a cluster of helices and an alpha+beta sandwich

4. Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)

5. Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)
   in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
   

6. Protein 6-aminohexanoate-dimer hydrolase NylC [160972] (1 species)
   NylB'

7. Species Flavobacterium sp. [TaxId:239] [160973] (11 PDB entries)
   Uniprot P07062 5-392

8. Domain d2dcfa1: 2dcf A:5-392 [146485]
   complexed with aca, gol, mes, so4; mutant

Details for d2dcfa1

PDB Entry: 2dcf, 1.4 Å

PDB Description: crystal structure of 6-aminohexanoate-dimer hydrolase s112a/g181d/h266n mutant with substrate

PDB Compounds: (A:) 6-aminohexanoate-dimer hydrolase

SCOPe Domain Sequences for d2dcfa1:

Sequence, based on SEQRES records:

>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}
stgqhparypgaaageptldswqepphnrwafahlgemvpsaavsrrpvnapghalarlg
aiaaqlpdleqrleqtytdaflvlrgtevvaeyyragfapddrhllmavskslcgtvvga
lvdegridpaqpvteyvpelagsvydgpsvlqvldmqisidynedyvdpasevqthdrsa
gwrtrrhgdpadtyeflttlrgdgstgefqycsantdvlawivervtglryvealstylw
akldadrdatitvdttgfgfanggvsctardlarvgrmmldggvapggrvvsedwvrrvl
aggsheamtdkgftntfpdgsytrqwwctgnergnvsgigihgqnlwldpltdsvivkls
swpdpdtehwhrlqngilldvsraldav

Sequence, based on observed residues (ATOM records):

>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}
stgqhparypgaaageptldswqepphnrwafahlgemvpsaavsrrpghalarlgaiaa
qlpdleqrleqtytdaflvlrgtevvaeyyragfapddrhllmavskslcgtvvgalvde
gridpaqpvteyvpelagsvydgpsvlqvldmqisidynedyvdpasevqthdrsagwrt
rrhgdpadtyeflttlrgdgstgefqycsantdvlawivervtglryvealstylwakld
adrdatitvdttgfgfanggvsctardlarvgrmmldggvapggrvvsedwvrrvlaggs
heamtdkgftntfpdgsytrqwwctgnergnvsgigihgqnlwldpltdsvivklsswpd
pdtehwhrlqngilldvsraldav

Timeline for d2dcfa1:

• d2dcfa1 first appeared in SCOP 1.75
  
• d2dcfa1 appears in SCOPe 2.07