SCOPe 2.08: Domain d2c38v1: 2c38 V:9-155

Lineage for d2c38v1 (2c38 V:9-155)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
   core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover

4. Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)

5. Family d.14.1.4: Ribonuclease PH domain 1-like [54229] (11 proteins)

6. Protein Exosome complex exonuclease 1, ECX1 [159923] (2 species)

7. Species Sulfolobus solfataricus [TaxId:2287] [159924] (9 PDB entries)
   Uniprot Q9UXC2 8-155

8. Domain d2c38v1: 2c38 V:9-155 [146318]
   Other proteins in same PDB: d2c38a1, d2c38a2, d2c38b2, d2c38c1, d2c38c2, d2c38d2, d2c38e1, d2c38e2, d2c38f2, d2c38g1, d2c38g2, d2c38h2, d2c38i1, d2c38i2, d2c38j2, d2c38k1, d2c38k2, d2c38l2, d2c38m1, d2c38m2, d2c38n2, d2c38o1, d2c38o2, d2c38p2, d2c38q1, d2c38q2, d2c38r2, d2c38s1, d2c38s2, d2c38t2, d2c38u1, d2c38u2, d2c38v2, d2c38w1, d2c38w2, d2c38x2
   automatically matched to 2BR2 B:8-155
   protein/RNA complex; complexed with amp, cl

Details for d2c38v1

PDB Entry: 2c38, 3.1 Å

PDB Description: rnase ph core of the archaeal exosome in complex with a5 rna

PDB Compounds: (V:) probable exosome complex exonuclease 1

SCOPe Domain Sequences for d2c38v1:

Sequence; same for both SEQRES and ATOM records:

>d2c38v1 d.14.1.4 (V:9-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]}
rpklilddgkrtdgrkpdelrsikielgvlknadgsaifemgntkaiaavygpkemhprh
lslpdravlrvryhmtpfstderknpapsrreielskvirealesavlvelfprtaidvf
teilqadagsrlvslmaaslaladagi

Timeline for d2c38v1:

• d2c38v1 first appeared in SCOP 1.75
  
• d2c38v1 appears in SCOPe 2.07