SCOPe 2.08: Domain d2bonb2: 2bon B:5-299

Lineage for d2bonb2 (2bon B:5-299)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.52: NAD kinase/diacylglycerol kinase-like [111330] (1 superfamily)
   2 domains: d1 [alpha/beta; related to the PFK N-terminal domain (53784)]; d2 [all-beta; atypical beta-sandwich made of 4 structural repeats of beta(3) unit]

4. Superfamily e.52.1: NAD kinase/diacylglycerol kinase-like [111331] (3 families)

5. Family e.52.1.2: Diacylglycerol kinase-like [160984] (2 proteins)
   N-terminal, catalytic domain is covered by Pfam PF00781

6. Protein Lipid kinase YegS [160985] (2 species)

7. Species Escherichia coli [TaxId:562] [160987] (2 PDB entries)
   Uniprot P76407 4-299! Uniprot P76407 5-299

8. Domain d2bonb2: 2bon B:5-299 [146164]
   Other proteins in same PDB: d2bona2, d2bonb3
   automated match to d2bona1
   complexed with mg

Details for d2bonb2

PDB Entry: 2bon, 1.9 Å

PDB Description: structure of an escherichia coli lipid kinase (yegs)

PDB Compounds: (B:) lipid kinase

SCOPe Domain Sequences for d2bonb2:

Sequence, based on SEQRES records:

>d2bonb2 e.52.1.2 (B:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
pasllilngkstdnlplreaimllreegmtihvrvtwekgdaaryveearkfgvatviag
ggdgtinevstaliqcegddipalgilplgtandfatsvgipealdkalklaiagdaiai
dmaqvnkqtcfinmatggfgtrittetpeklkaalgsvsyiihglmrmdtlqpdrceirg
enfhwqgdalvigigngrqagggqqlcpnalindgllqlriftgdeilpalvstlksded
npniiegasswfdiqaphditfnldgeplsgqnfhieilpaalrcrlppdcpllr

Sequence, based on observed residues (ATOM records):

>d2bonb2 e.52.1.2 (B:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
pasllilngkstdnlplreaimllreegmtihvrvtwekgdaaryveearkfgvatviag
ggdgtinevstaliqcegddipalgilplgtandfatsvgipealdkalklaiagdaiai
dmaqvnkqtcfinmatggfgtrivsyiihglmrmdtlqpdrceirgenfhwqgdalvigi
gngrqagggqqlcpnalindgllqlriftpniiegasswfdiqaphditfnldgeplsgq
nfhieilpaalrcrlppdcpllr

Timeline for d2bonb2:

• d2bonb2 first appeared in SCOP 1.75, called d2bonb1
  
• d2bonb2 appears in SCOPe 2.07