SCOP 1.75: Domain d2ny7g1: 2ny7 G:83-491

Lineage for d2ny7g1 (2ny7 G:83-491)

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.172: gp120 core [56501] (1 superfamily)
   unusual fold

4. Superfamily d.172.1: gp120 core [56502] (1 family)

5. Family d.172.1.1: gp120 core [56503] (1 protein)

6. Protein gp120 core [56504] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [56505] (20 PDB entries)

8. Domain d2ny7g1: 2ny7 G:83-491 [145709]
   Other proteins in same PDB: d2ny7h1, d2ny7h2, d2ny7l1, d2ny7l2
   automatically matched to 2NY5 G:83-491
   complexed with nag; mutant

Details for d2ny7g1

PDB Entry: 2ny7, 2.3 Å

PDB Description: hiv-1 gp120 envelope glycoprotein complexed with the broadly neutralizing cd4-binding-site antibody b12

PDB Compounds: (G:) envelope glycoprotein gp120

SCOP Domain Sequences for d2ny7g1:

Sequence, based on SEQRES records:

>d2ny7g1 d.172.1.1 (G:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvkltplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvssqlllngsla
eeevvirscnftdnaktiivqlntsveinctgaghcniarakwnntlkqiasklreqfgn
nktiifkqssggdpeivthwfncggeffycnstqlfnstwfnstwstegsnntegsdtit
lpcrikqiinmwckvgkmmyappisgqircssnitgllltrdggnsnneseifrpgggdm
rdnwrselykykvvki

Sequence, based on observed residues (ATOM records):

>d2ny7g1 d.172.1.1 (G:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvacpkvsfepipihycapagfai
lkcnnktfngtgpctnvstvqcthgirpvvssqlllngslaeeevvirscnftdnaktii
vqlntsveinctgaghcniarakwnntlkqiasklreqfgnnktiifkqssggdpeivth
wfncggeffycnstqlfnstwfnstwsgsdtitlpcrikqiinmwckvgkmmyappisgq
ircssnitgllltrdggnsnneseifrpgggdmrdnwrselykykvvki

Timeline for d2ny7g1:

• d2ny7g1 is new in SCOP 1.75
  
• d2ny7g1 is called d2ny7g_ in SCOPe 2.01
  
• d2ny7g1 appears in the current release, SCOPe 2.08, called d2ny7g_