SCOPe 2.08: Domain d2ny7g_: 2ny7 G:

Lineage for d2ny7g_ (2ny7 G:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.172: gp120 core [56501] (1 superfamily)
   unusual fold

4. Superfamily d.172.1: gp120 core [56502] (1 family)

5. Family d.172.1.1: gp120 core [56503] (2 proteins)

6. Protein automated matches [190166] (1 species)
   not a true protein

7. Species Human immunodeficiency virus 1 [TaxId:11676] [186893] (4 PDB entries)

8. Domain d2ny7g_: 2ny7 G: [145709]
   Other proteins in same PDB: d2ny7h1, d2ny7h2, d2ny7l1, d2ny7l2
   automated match to d1g9mg_
   complexed with nag

Details for d2ny7g_

PDB Entry: 2ny7, 2.3 Å

PDB Description: hiv-1 gp120 envelope glycoprotein complexed with the broadly neutralizing cd4-binding-site antibody b12

PDB Compounds: (G:) envelope glycoprotein gp120

SCOPe Domain Sequences for d2ny7g_:

Sequence, based on SEQRES records:

>d2ny7g_ d.172.1.1 (G:) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvkltplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvssqlllngsla
eeevvirscnftdnaktiivqlntsveinctgaghcniarakwnntlkqiasklreqfgn
nktiifkqssggdpeivthwfncggeffycnstqlfnstwfnstwstegsnntegsdtit
lpcrikqiinmwckvgkmmyappisgqircssnitgllltrdggnsnneseifrpgggdm
rdnwrselykykvvkie

Sequence, based on observed residues (ATOM records):

>d2ny7g_ d.172.1.1 (G:) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvacpkvsfepipihycapagfai
lkcnnktfngtgpctnvstvqcthgirpvvssqlllngslaeeevvirscnftdnaktii
vqlntsveinctgaghcniarakwnntlkqiasklreqfgnnktiifkqssggdpeivth
wfncggeffycnstqlfnstwfnstwsgsdtitlpcrikqiinmwckvgkmmyappisgq
ircssnitgllltrdggnsnneseifrpgggdmrdnwrselykykvvkie

Timeline for d2ny7g_:

• d2ny7g_ first appeared in SCOP 1.75, called d2ny7g1
  
• d2ny7g_ appears in SCOPe 2.07