SCOPe 2.01: Domain d2ny6a1: 2ny6 A:83-491

Lineage for d2ny6a1 (2ny6 A:83-491)

1. Root: SCOPe 2.01

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.172: gp120 core [56501] (1 superfamily)
   unusual fold

4. Superfamily d.172.1: gp120 core [56502] (1 family)

5. Family d.172.1.1: gp120 core [56503] (2 proteins)

6. Protein gp120 core [56504] (2 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [56505] (18 PDB entries)

8. Domain d2ny6a1: 2ny6 A:83-491 [145708]
   Other proteins in same PDB: d2ny6b1, d2ny6b2, d2ny6c1, d2ny6c2, d2ny6d1, d2ny6d2
   complexed with nag, suc

Details for d2ny6a1

PDB Entry: 2ny6, 2.8 Å

PDB Description: hiv-1 gp120 envelope glycoprotein (m95w, w96c, i109c, t123c, t257s, v275c,s334a, s375w, q428c, g431c) complexed with cd4 and antibody 17b

PDB Compounds: (A:) envelope glycoprotein gp120

SCOPe Domain Sequences for d2ny6a1:

Sequence, based on SEQRES records:

>d2ny6a1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvklcplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvssqlllngsla
eeevvirscnftdnaktiivqlntsveinctgaghcniarakwnntlkqiasklreqfgn
nktiifkqssggdpeivthwfncggeffycnstqlfnstwfnstwstegsnntegsdtit
lpcrikqiinmwckvckamyappisgqircssnitgllltrdggnsnneseifrpgggdm
rdnwrselykykvvki

Sequence, based on observed residues (ATOM records):

>d2ny6a1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvklcplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvssqlllngsla
eeevvirscnftdnaktiivqlntsveinctgaghcniarakwnntlkqiasklreqfgn
nktiifkqssggdpeivthwfncggeffycnstqlfnstwfngsdtitlpcrikqiinmw
ckvckamyappisgqircssnitgllltrdggnsnneseifrpgggdmrdnwrselykyk
vvki

Timeline for d2ny6a1:

• d2ny6a1 first appeared in SCOP 1.75
  
• d2ny6a1 appears in SCOPe 2.02
  
• d2ny6a1 appears in the current release, SCOPe 2.08