SCOPe 2.08: Domain d2ny5g1: 2ny5 G:83-491

Lineage for d2ny5g1 (2ny5 G:83-491)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.172: gp120 core [56501] (1 superfamily)
   unusual fold

4. Superfamily d.172.1: gp120 core [56502] (1 family)

5. Family d.172.1.1: gp120 core [56503] (2 proteins)

6. Protein gp120 core [56504] (3 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [56505] (18 PDB entries)

8. Domain d2ny5g1: 2ny5 G:83-491 [145707]
   Other proteins in same PDB: d2ny5c1, d2ny5c2, d2ny5h1, d2ny5h2, d2ny5l1, d2ny5l2
   complexed with nag

Details for d2ny5g1

PDB Entry: 2ny5, 2.5 Å

PDB Description: hiv-1 gp120 envelope glycoprotein (m95w, w96c, i109c, t257s, v275c, s334a, s375w, q428c, a433m) complexed with cd4 and antibody 17b

PDB Compounds: (G:) envelope glycoprotein gp120

SCOPe Domain Sequences for d2ny5g1:

Sequence, based on SEQRES records:

>d2ny5g1 d.172.1.1 (G:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvkltplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvssqlllngsla
eeevvirscnftdnaktiivqlntsveinctgaghcniarakwnntlkqiasklreqfgn
nktiifkqssggdpeivthwfncggeffycnstqlfnstwfnstwstegsnntegsdtit
lpcrikqiinmwckvgkmmyappisgqircssnitgllltrdggnsnneseifrpgggdm
rdnwrselykykvvki

Sequence, based on observed residues (ATOM records):

>d2ny5g1 d.172.1.1 (G:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
evvlvnvtenfnwckndmveqmhedicslwdqslkpcvkltplcvgagscntsvitqacp
kvsfepipihycapagfailkcnnktfngtgpctnvstvqcthgirpvvssqlllngsla
eeevvirscnftdnaktiivqlntsveinctgaghcniarakwnntlkqiasklreqfgn
nktiifkqssggdpeivthwfncggeffycnstqlfnstwfngsdtitlpcrikqiinmw
ckvgkmmyappisgqircssnitgllltrdggnsnneseifrpgggdmrdnwrselykyk
vvki

Timeline for d2ny5g1:

• d2ny5g1 first appeared in SCOP 1.75
  
• d2ny5g1 appears in SCOPe 2.07