SCOPe 2.07: Domain d2jbgd_: 2jbg D:

Lineage for d2jbgd_ (2jbg D:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.4: His-Me finger endonucleases [54059] (1 superfamily)
   core: (alpha)-beta-omega_loop-beta-alpha; embeded in larger different structures

4. Superfamily d.4.1: His-Me finger endonucleases [54060] (8 families)
   common motif contains conserved histidine residue and metal-binding site

5. Family d.4.1.1: HNH-motif [54061] (3 proteins)

6. Protein DNase domain of colicin E7 [54062] (1 species)

7. Species Escherichia coli [TaxId:562] [54063] (10 PDB entries)

8. Domain d2jbgd_: 2jbg D: [145682]
   Other proteins in same PDB: d2jbga_, d2jbgc_
   automated match to d1mz8b_
   protein/DNA complex; complexed with so4, zn; mutant

Details for d2jbgd_

PDB Entry: 2jbg, 2.2 Å

PDB Description: crystal structure of the mutant n560a of the nuclease domain of cole7 in complex with im7

PDB Compounds: (D:) colicin e7

SCOPe Domain Sequences for d2jbgd_:

Sequence, based on SEQRES records:

>d2jbgd_ d.4.1.1 (D:) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
nkpgkatgkgkpvnnkwlnnagkdlgspvpdrianklrdkefksfddfrkkfweevskdp
elskqfsrnnndrmkvgkapktrtqdvsgkrtsfelhhekpisqnggvydmdaisvvtpk
rhidihrgk

Sequence, based on observed residues (ATOM records):

>d2jbgd_ d.4.1.1 (D:) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
nkpgkatgkgkpvnnkwlnnagkdlgspvpdrianklrdkefksfddfrkkfweevskdp
elskqfsrnnndrmkvgkapktrtqdvsgkrtsfelhhevydmdaisvvtpkrhidihrg
k

Timeline for d2jbgd_:

• d2jbgd_ first appeared in SCOP 1.75, called d2jbgd1
  
• d2jbgd_ appears in SCOPe 2.06
  
• d2jbgd_ appears in the current release, SCOPe 2.08