SCOPe 2.01: Domain d2gycf1: 2gyc F:59-149

Lineage for d2gycf1 (2gyc F:59-149)

1. Root: SCOPe 2.01

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.99: Ribosomal protein L9 C-domain [55652] (1 superfamily)
   alpha-beta-alpha(2)-beta(2); 2 layers: alpha/beta

4. Superfamily d.99.1: Ribosomal protein L9 C-domain [55653] (1 family)

5. Family d.99.1.1: Ribosomal protein L9 C-domain [55654] (1 protein)

6. Protein Ribosomal protein L9 C-domain [55655] (3 species)

7. Species Escherichia coli [TaxId:562] [160580] (29 PDB entries)
   Uniprot P0A7R1 59-149

8. Domain d2gycf1: 2gyc F:59-149 [145265]
   Other proteins in same PDB: d2gyc11, d2gyc31, d2gyc32, d2gyc51, d2gyc52, d2gycb1, d2gycc1, d2gycd1, d2gycf2, d2gycg1, d2gycg2, d2gych1, d2gyci1, d2gycj1, d2gyck1, d2gycm1, d2gycn1, d2gyco1, d2gycq1, d2gycs1, d2gyct1, d2gycu1, d2gycw1, d2gycx1
   automatically matched to 2AW4 H:59-149
   protein/RNA complex

Details for d2gycf1

PDB Entry: 2gyc, 15 Å

PDB Description: Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

PDB Compounds: (F:) 50S ribosomal protein L9

SCOPe Domain Sequences for d2gycf1:

Sequence; same for both SEQRES and ATOM records:

>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}
aevlaaanaraekinaletvtiaskagdegklfgsigtrdiadavtaagvevaksevrlp
ngvlrttgehevsfqvhsevfakvivnvvae

Timeline for d2gycf1:

• d2gycf1 first appeared in SCOP 1.75
  
• d2gycf1 appears in SCOPe 2.02
  
• d2gycf1 appears in the current release, SCOPe 2.08