SCOPe 2.08: Domain d2ghod1: 2gho D:3-1501

Lineage for d2ghod1 (2gho D:3-1501)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.2: RNA-polymerase beta-prime [64490] (4 proteins)

6. Protein RNA-polymerase beta-prime [64493] (2 species)

7. Species Thermus aquaticus [TaxId:271] [64494] (4 PDB entries)

8. Domain d2ghod1: 2gho D:3-1501 [145197]
   Other proteins in same PDB: d2ghoa1, d2ghoa2, d2ghob1, d2ghob2, d2ghoc1
   protein/RNA complex

Details for d2ghod1

PDB Entry: 2gho, 5 Å

PDB Description: recombinant thermus aquaticus rna polymerase for structural studies

PDB Compounds: (D:) DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta'

SCOPe Domain Sequences for d2ghod1:

Sequence, based on SEQRES records:

>d2ghod1 e.29.1.2 (D:3-1501) RNA-polymerase beta-prime {Thermus aquaticus [TaxId: 271]}
kevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgk
ykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlsate
leqvlyfnkyivldpkgavldgvpvekrqlltdeeyggidarmgaeaiqellkeldlekl
erelleemkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdgg
rfatsdlndlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtn
pgserplrsltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelf
kpfllkkmeekafapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgi
qafqpvlvegqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspa
sgeplakpsrdiilglyyitqvrkekkgagmafatpeealaayergevalnapivvagre
tsvgrlkfvfanpdeallavahglldlqdvvtvrylgrrletspgrilfarivgeavgde
kvaqeliqmdvpqeknslkdlvyqaflrlgmektarlldalkyygftlsttsgitigidd
avipeekqryleeadrklrqieqayemgfltdrerydqviqlwtettekvtqavfknfee
nypfnplyvmaqsgargnpqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfis
shgarkggadtalrtadsgyltrklvdvaheivvreadcgttnyisvplfqmdevtrtlr
lrkrsdiesglygrvlarevealgrrleegrylsledvhflikaaeagevrevpvrsplt
cqtrygvcqkcygydlsmarpvsigeavgvvaaesigepgtqltmrtfhtggvavgtdit
qglprvielfearrpkakaviseidgvvrieegedrlsvfvesegfskeyklpkdarllv
kdgdyveagqpltrgaidphqlleakgpeaverylvdeiqkvyraqgvklhdkhieivvr
qmlkyvevtdpgdsrllegqvlekwdvealnerliaegkvpvawkpllmgvtksalstks
wlsaasfqntthvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqrtlk
aieearke

Sequence, based on observed residues (ATOM records):

>d2ghod1 e.29.1.2 (D:3-1501) RNA-polymerase beta-prime {Thermus aquaticus [TaxId: 271]}
kevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgk
ykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlsate
leqvlyfnkyivldpkgavldgvpvekrqlltdeeyggidarmgaeaiqellkeldlekl
erelleemkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdgg
rfatsdlndlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtn
pgserplrsltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelf
kpfllkkmeekafapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgi
qafqpvlvegqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspa
sgeplakpsrdiilglyyitqvrkekkgagmafatpeealaayergevalnapivvagre
tsvgrlkfvfanpdeallavahglldlqdvvtvrylgrrletspgrilfarivgeavgde
kvaqeliqmdvpqeknslkdlvyqaflrlgmektarlldalkyygftlsttsgitigidd
avipeekqryleeadrklrqieqayemgfltdrerydqviqlwtettekvtqavfknfee
nypfnplyvmaqsgargnpqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfis
shgarkggadtalrtadsgyltrklvdvaheivvreadcgttnyisvplfqmdevtrtlr
lrkrsdiesglygrvlarevealgrrleegrylsledvhflikaaeagevrevpvrsplt
cqtrygvcqkcygydlsmarpvsigeavgvvaaesigepgtqltmrttqglprvielfea
rrpkakaviseidgvvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpl
trgaidphqlleakgpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpg
dsrllegqvlekwdvealnerliaegkvpvawkpllmgvtksalstkswlsaasfqntth
vlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqrtlkaieearke

Timeline for d2ghod1:

• d2ghod1 first appeared in SCOP 1.75
  
• d2ghod1 appears in SCOPe 2.07