Lineage for d2bmkb1 (2bmk B:1-113)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2017323Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2017580Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (68 PDB entries)
    Uniprot P01796 # ! HV27_MOUSE Ig heavy chain V-III region A4
  8. 2017626Domain d2bmkb1: 2bmk B:1-113 [144992]
    Other proteins in same PDB: d2bmka1, d2bmka2, d2bmkb2, d2bmkh2, d2bmkl1, d2bmkl2
    automated match to d1wc7b1
    complexed with iod, pdd

Details for d2bmkb1

PDB Entry: 2bmk (more details), 2.3 Å

PDB Description: fab fragment of plp-dependent catalytic antibody 15a9 in complex with phosphopyridoxyl-d-alanine
PDB Compounds: (B:) fab fragment of catalytic antibody 15a9, heavy chain

SCOPe Domain Sequences for d2bmkb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2bmkb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

SCOPe Domain Coordinates for d2bmkb1:

Click to download the PDB-style file with coordinates for d2bmkb1.
(The format of our PDB-style files is described here.)

Timeline for d2bmkb1: