Lineage for d1yyms1 (1yym S:1002-1027)

  1. Root: SCOPe 2.05
  2. 1975766Class k: Designed proteins [58788] (44 folds)
  3. 1976133Fold k.23: Scorpion toxin-based designs [58917] (1 superfamily)
  4. 1976134Superfamily k.23.1: Scorpion toxin-based designs [58918] (2 families) (S)
  5. 1976139Family k.23.1.2: Mini-protein reproducing the core of the CD4 surface [58922] (1 protein)
  6. 1976140Protein Mini-protein reproducing the core of the CD4 surface [58923] (1 species)
    interacting with the hiv-1 envelope glycoprotein
  7. 1976141Species Synthetic [58924] (5 PDB entries)
  8. 1976143Domain d1yyms1: 1yym S:1002-1027 [144724]
    Other proteins in same PDB: d1yymg_, d1yymh1, d1yymh2, d1yyml1, d1yyml2, d1yymp_, d1yymq1, d1yymq2, d1yymr1, d1yymr2
    automatically matched to 1YYM M:2-27
    complexed with edo, ipa, nag, ndg

Details for d1yyms1

PDB Entry: 1yym (more details), 2.2 Å

PDB Description: crystal structure of f23, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
PDB Compounds: (S:) F23, scorpion-toxin mimic of CD4

SCOPe Domain Sequences for d1yyms1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yyms1 k.23.1.2 (S:1002-1027) Mini-protein reproducing the core of the CD4 surface {Synthetic}
nlhfcqlrckslgllgkcagsfcacx

SCOPe Domain Coordinates for d1yyms1:

Click to download the PDB-style file with coordinates for d1yyms1.
(The format of our PDB-style files is described here.)

Timeline for d1yyms1: