Lineage for Protein: DD-carboxypeptidase DacB

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3012718Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 3012719Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 3014028Family e.3.1.3: Dac-like [144040] (3 proteins)
    Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology
  6. 3014107Protein DD-carboxypeptidase DacB [144045] (2 species)
    Penicillin-binding protein 4

Species:

  1. 3014108Escherichia coli [TaxId:562] [144046] (6 PDB entries)
    Uniprot P24228 22-477
    1. Domain for 2ex2:
    2. Domain for 2ex6:
    3. Domain for 2ex8:
    4. Domain for 2ex9:
    5. Domain for 2exa:
    6. Domain for 2exb:
  2. 3014115Haemophilus influenzae [TaxId:727] [189139] (4 PDB entries)
    1. Domains for 3a3d:
      1. 3014116Domain d3a3da1: 3a3d A:28-479 [171697]
        Other proteins in same PDB: d3a3da2, d3a3db2
        automated match to d2ex2a1
        complexed with gol
      2. 3014117Domain d3a3db1: 3a3d B:28-479 [171698]
        Other proteins in same PDB: d3a3da2, d3a3db2
        automated match to d2ex2a1
        complexed with gol
    2. Domains for 3a3e:
      1. 3014122Domain d3a3ea1: 3a3e A:28-479 [171699]
        Other proteins in same PDB: d3a3ea2, d3a3eb2
        automated match to d2ex2a1
        complexed with cmv
      2. 3014123Domain d3a3eb1: 3a3e B:28-479 [171700]
        Other proteins in same PDB: d3a3ea2, d3a3eb2
        automated match to d2ex2a1
        complexed with cmv
    3. Domains for 3a3f:
      1. 3014120Domain d3a3fa1: 3a3f A:28-479 [171701]
        Other proteins in same PDB: d3a3fa2, d3a3fb2
        automated match to d2ex2a1
        complexed with fmz
      2. 3014121Domain d3a3fb1: 3a3f B:28-479 [171702]
        Other proteins in same PDB: d3a3fa2, d3a3fb2
        automated match to d2ex2a1
        complexed with fmz
    4. Domains for 3a3i:
      1. 3014118Domain d3a3ia1: 3a3i A:28-479 [171703]
        Other proteins in same PDB: d3a3ia2, d3a3ib2
        automated match to d2ex2a1
        complexed with aix
      2. 3014119Domain d3a3ib1: 3a3i B:28-479 [171704]
        Other proteins in same PDB: d3a3ia2, d3a3ib2
        automated match to d2ex2a1
        complexed with aix

More info for Protein DD-carboxypeptidase DacB from e.3.1.3: Dac-like

Timeline for Protein DD-carboxypeptidase DacB from e.3.1.3: Dac-like: