Lineage for Species: Actinomadura sp. [TaxId: 1989]

  1. Root: SCOPe 2.04
  2. 1689992Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
  3. 1690252Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 1690253Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 1691106Family e.3.1.3: Dac-like [144040] (3 proteins)
    Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology
  6. 1691107Protein D-alanyl-D-alanine carboxypeptidase Dac [144043] (1 species)
  7. 1691108Species Actinomadura sp. [TaxId:1989] [144044] (17 PDB entries)
    Uniprot P39045 50-516

PDB entries in Species: Actinomadura sp. [TaxId: 1989]:

  1. Domain(s) for 1w79:
    1. 1691109Domain d1w79a1: 1w79 A:1-467 [120680]
      complexed with mg, so4
    2. 1691110Domain d1w79b1: 1w79 B:1-466 [120681]
      automatically matched to 1W79 A:1-467
      complexed with mg, so4
    3. 1691111Domain d1w79c1: 1w79 C:1-466 [120682]
      automatically matched to 1W79 A:1-467
      complexed with mg, so4
    4. 1691112Domain d1w79d1: 1w79 D:1-467 [120683]
      automatically matched to 1W79 A:1-467
      complexed with mg, so4
  2. Domain(s) for 1w8q:
    1. 1691165Domain d1w8qa_: 1w8q A: [120730]
      automated match to d1w79a1
      complexed with co, so4
    2. 1691166Domain d1w8qb_: 1w8q B: [120731]
      automated match to d1w79a1
      complexed with co, so4
    3. 1691167Domain d1w8qc_: 1w8q C: [120732]
      automated match to d1w79a1
      complexed with co, so4
    4. 1691168Domain d1w8qd_: 1w8q D: [120733]
      automated match to d1w79a1
      complexed with co, so4
  3. Domain(s) for 1w8y:
    1. 1691145Domain d1w8ya_: 1w8y A: [120754]
      automated match to d1w79a1
      complexed with mg, ncf, so4
    2. 1691146Domain d1w8yb_: 1w8y B: [120755]
      automated match to d1w79a1
      complexed with mg, ncf, so4
    3. 1691147Domain d1w8yc_: 1w8y C: [120756]
      automated match to d1w79a1
      complexed with mg, ncf, so4
    4. 1691148Domain d1w8yd_: 1w8y D: [120757]
      automated match to d1w79a1
      complexed with mg, ncf, so4
  4. Domain(s) for 2vgj:
    1. 1691133Domain d2vgja_: 2vgj A: [206349]
      automated match to d1w79a1
      complexed with mg, rec, so4
    2. 1691134Domain d2vgjb_: 2vgj B: [206350]
      automated match to d1w79a1
      complexed with mg, rec, so4
    3. 1691135Domain d2vgjc_: 2vgj C: [206351]
      automated match to d1w79a1
      complexed with mg, rec, so4
    4. 1691136Domain d2vgjd_: 2vgj D: [206352]
      automated match to d1w79a1
      complexed with mg, rec, so4
  5. Domain(s) for 2vgk:
    1. 1691137Domain d2vgka_: 2vgk A: [206353]
      automated match to d1w79a1
      complexed with mg, rez, so4
    2. 1691138Domain d2vgkb_: 2vgk B: [206354]
      automated match to d1w79a1
      complexed with mg, rez, so4
    3. 1691139Domain d2vgkc_: 2vgk C: [206355]
      automated match to d1w79a1
      complexed with mg, rez, so4
    4. 1691140Domain d2vgkd_: 2vgk D: [206356]
      automated match to d1w79a1
      complexed with mg, rez, so4
  6. Domain(s) for 2wke:
    1. 1691125Domain d2wkea_: 2wke A: [198513]
      automated match to d2wked_
      complexed with biy, co, so4
    2. 1691126Domain d2wkeb_: 2wke B: [198514]
      automated match to d2wked_
      complexed with biy, co, so4
    3. 1691127Domain d2wkec_: 2wke C: [198515]
      automated match to d2wked_
      complexed with biy, co, so4
    4. 1691128Domain d2wked_: 2wke D: [169400]
      automated match to d1w79a1
      complexed with biy, co, so4
  7. Domain(s) for 2xk1:
    1. 1691169Domain d2xk1a_: 2xk1 A: [207259]
      automated match to d2wked_
      complexed with co, ewb, so4
    2. 1691170Domain d2xk1b_: 2xk1 B: [207260]
      automated match to d2wked_
      complexed with co, ewb, so4
    3. 1691171Domain d2xk1c_: 2xk1 C: [207261]
      automated match to d2wked_
      complexed with co, ewb, so4
    4. 1691172Domain d2xk1d_: 2xk1 D: [207262]
      automated match to d2wked_
      complexed with co, ewb, so4
  8. Domain(s) for 2xln:
    1. 1691129Domain d2xlna_: 2xln A: [207268]
      automated match to d1w79a1
      complexed with co, ewa, so4
    2. 1691130Domain d2xlnb_: 2xln B: [207269]
      automated match to d1w79a1
      complexed with co, ewa, so4
    3. 1691131Domain d2xlnc_: 2xln C: [207270]
      automated match to d1w79a1
      complexed with co, ewa, so4
    4. 1691132Domain d2xlnd_: 2xln D: [207271]
      automated match to d1w79a1
      complexed with co, ewa, so4
  9. Domain(s) for 2y4a:
    1. 1691157Domain d2y4aa_: 2y4a A: [207469]
      automated match to d2wked_
      complexed with bh6, mg, so4
    2. 1691158Domain d2y4ab_: 2y4a B: [207470]
      automated match to d2wked_
      complexed with bh6, mg, so4
    3. 1691159Domain d2y4ac_: 2y4a C: [207471]
      automated match to d2wked_
      complexed with bh6, mg, so4
    4. 1691160Domain d2y4ad_: 2y4a D: [207472]
      automated match to d2wked_
      complexed with bh6, mg, so4
  10. Domain(s) for 2y55:
    1. 1691153Domain d2y55a_: 2y55 A: [207473]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
    2. 1691154Domain d2y55b_: 2y55 B: [207474]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
    3. 1691155Domain d2y55c_: 2y55 C: [207475]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
    4. 1691156Domain d2y55d_: 2y55 D: [207476]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
  11. Domain(s) for 2y59:
    1. 1691141Domain d2y59a_: 2y59 A: [207477]
      automated match to d2wked_
      complexed with mg, so4, za3
    2. 1691142Domain d2y59b_: 2y59 B: [207478]
      automated match to d2wked_
      complexed with mg, so4, za3
    3. 1691143Domain d2y59c_: 2y59 C: [207479]
      automated match to d2wked_
      complexed with mg, so4, za3
    4. 1691144Domain d2y59d_: 2y59 D: [207480]
      automated match to d2wked_
      complexed with mg, so4, za3
  12. Domain(s) for 3zcz:
    1. 1691149Domain d3zcza_: 3zcz A: [201286]
      automated match to d3zczd_
      complexed with mg, so4, tfr
    2. 1691150Domain d3zczb_: 3zcz B: [201287]
      automated match to d3zczd_
      complexed with mg, so4, tfr
    3. 1691151Domain d3zczc_: 3zcz C: [201288]
      automated match to d3zczd_
      complexed with mg, so4, tfr
    4. 1691152Domain d3zczd_: 3zcz D: [196732]
      automated match to d1w79a1
      complexed with mg, so4, tfr
  13. Domain(s) for 3zvt:
    1. 1691173Domain d3zvta_: 3zvt A: [250871]
      automated match to d1w79b1
      complexed with b07, mg, so4
    2. 1691174Domain d3zvtb_: 3zvt B: [250872]
      automated match to d1w79b1
      complexed with b07, mg, so4
    3. 1691175Domain d3zvtc_: 3zvt C: [250873]
      automated match to d1w79b1
      complexed with b07, mg, so4
    4. 1691176Domain d3zvtd_: 3zvt D: [250874]
      automated match to d1w79b1
      complexed with b07, mg, so4
  14. Domain(s) for 3zvw:
    1. 1691113Domain d3zvwa_: 3zvw A: [218543]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
    2. 1691114Domain d3zvwb_: 3zvw B: [218544]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
    3. 1691115Domain d3zvwc_: 3zvw C: [218545]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
    4. 1691116Domain d3zvwd_: 3zvw D: [218546]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
  15. Domain(s) for 4b4x:
    1. 1691161Domain d4b4xa_: 4b4x A: [219324]
      automated match to d2wked_
      complexed with hqz, mg, so4
    2. 1691162Domain d4b4xb_: 4b4x B: [219325]
      automated match to d2wked_
      complexed with hqz, mg, so4
    3. 1691163Domain d4b4xc_: 4b4x C: [219326]
      automated match to d2wked_
      complexed with hqz, mg, so4
    4. 1691164Domain d4b4xd_: 4b4x D: [219327]
      automated match to d2wked_
      complexed with hqz, mg, so4
  16. Domain(s) for 4b4z:
    1. 1691121Domain d4b4za_: 4b4z A: [219328]
      automated match to d2wked_
      complexed with bsf, mg, so4
    2. 1691122Domain d4b4zb_: 4b4z B: [219329]
      automated match to d2wked_
      complexed with bsf, mg, so4
    3. 1691123Domain d4b4zc_: 4b4z C: [219330]
      automated match to d2wked_
      complexed with bsf, mg, so4
    4. 1691124Domain d4b4zd_: 4b4z D: [219331]
      automated match to d2wked_
      complexed with bsf, mg, so4
  17. Domain(s) for 4ben:
    1. 1691117Domain d4bena_: 4ben A: [201615]
      automated match to d2wked_
      complexed with gol, im2, mes, mg, so4
    2. 1691118Domain d4benb_: 4ben B: [196660]
      automated match to d1w79a1
      complexed with gol, im2, mes, mg, so4
    3. 1691119Domain d4benc_: 4ben C: [201616]
      automated match to d2wked_
      complexed with gol, im2, mes, mg, so4
    4. 1691120Domain d4bend_: 4ben D: [201617]
      automated match to d2wked_
      complexed with gol, im2, mes, mg, so4

More info for Species Actinomadura sp. [TaxId:1989] from e.3.1.3 D-alanyl-D-alanine carboxypeptidase Dac

Timeline for Species Actinomadura sp. [TaxId:1989] from e.3.1.3 D-alanyl-D-alanine carboxypeptidase Dac: