Lineage for Species: Actinomadura sp. [TaxId: 1989]

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3012718Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 3012719Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 3014028Family e.3.1.3: Dac-like [144040] (3 proteins)
    Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology
  6. 3014029Protein D-alanyl-D-alanine carboxypeptidase Dac [144043] (1 species)
  7. 3014030Species Actinomadura sp. [TaxId:1989] [144044] (19 PDB entries)
    Uniprot P39045 50-516

PDB entries in Species: Actinomadura sp. [TaxId: 1989]:

  1. Domain(s) for 1w79:
    1. 3014047Domain d1w79a1: 1w79 A:1-467 [120680]
      complexed with mg, so4
    2. 3014048Domain d1w79b1: 1w79 B:1-466 [120681]
      automatically matched to 1W79 A:1-467
      complexed with mg, so4
    3. 3014049Domain d1w79c1: 1w79 C:1-466 [120682]
      automatically matched to 1W79 A:1-467
      complexed with mg, so4
    4. 3014050Domain d1w79d1: 1w79 D:1-467 [120683]
      automatically matched to 1W79 A:1-467
      complexed with mg, so4
  2. Domain(s) for 1w8q:
    1. 3014083Domain d1w8qa_: 1w8q A: [120730]
      automated match to d1w79a1
      complexed with co, so4
    2. 3014084Domain d1w8qb_: 1w8q B: [120731]
      automated match to d1w79a1
      complexed with co, so4
    3. 3014085Domain d1w8qc_: 1w8q C: [120732]
      automated match to d1w79a1
      complexed with co, so4
    4. 3014086Domain d1w8qd_: 1w8q D: [120733]
      automated match to d1w79a1
      complexed with co, so4
  3. Domain(s) for 1w8y:
    1. 3014063Domain d1w8ya_: 1w8y A: [120754]
      automated match to d1w79a1
      complexed with mg, ncf, so4
    2. 3014064Domain d1w8yb_: 1w8y B: [120755]
      automated match to d1w79a1
      complexed with mg, ncf, so4
    3. 3014065Domain d1w8yc_: 1w8y C: [120756]
      automated match to d1w79a1
      complexed with mg, ncf, so4
    4. 3014066Domain d1w8yd_: 1w8y D: [120757]
      automated match to d1w79a1
      complexed with mg, ncf, so4
  4. Domain(s) for 2vgj:
    1. 3014055Domain d2vgja_: 2vgj A: [206349]
      automated match to d1w79a1
      complexed with mg, rec, so4
    2. 3014056Domain d2vgjb_: 2vgj B: [206350]
      automated match to d1w79a1
      complexed with mg, rec, so4
    3. 3014057Domain d2vgjc_: 2vgj C: [206351]
      automated match to d1w79a1
      complexed with mg, rec, so4
    4. 3014058Domain d2vgjd_: 2vgj D: [206352]
      automated match to d1w79a1
      complexed with mg, rec, so4
  5. Domain(s) for 2vgk:
    1. 3014059Domain d2vgka_: 2vgk A: [206353]
      automated match to d1w79a1
      complexed with mg, rez, so4
    2. 3014060Domain d2vgkb_: 2vgk B: [206354]
      automated match to d1w79a1
      complexed with mg, rez, so4
    3. 3014061Domain d2vgkc_: 2vgk C: [206355]
      automated match to d1w79a1
      complexed with mg, rez, so4
    4. 3014062Domain d2vgkd_: 2vgk D: [206356]
      automated match to d1w79a1
      complexed with mg, rez, so4
  6. Domain(s) for 2wke:
    1. 3014051Domain d2wkea_: 2wke A: [198513]
      automated match to d2wked_
      complexed with biy, co, so4
    2. 3014052Domain d2wkeb_: 2wke B: [198514]
      automated match to d2wked_
      complexed with biy, co, so4
    3. 3014053Domain d2wkec_: 2wke C: [198515]
      automated match to d2wked_
      complexed with biy, co, so4
    4. 3014054Domain d2wked_: 2wke D: [169400]
      automated match to d1w79a1
      complexed with biy, co, so4
  7. Domain(s) for 2xk1:
    1. 3014099Domain d2xk1a_: 2xk1 A: [207259]
      automated match to d2wked_
      complexed with co, ewb, so4
    2. 3014100Domain d2xk1b_: 2xk1 B: [207260]
      automated match to d2wked_
      complexed with co, ewb, so4
    3. 3014101Domain d2xk1c_: 2xk1 C: [207261]
      automated match to d2wked_
      complexed with co, ewb, so4
    4. 3014102Domain d2xk1d_: 2xk1 D: [207262]
      automated match to d2wked_
      complexed with co, ewb, so4
  8. Domain(s) for 2xln:
    1. 3014075Domain d2xlna_: 2xln A: [207268]
      automated match to d1w79a1
      complexed with co, ewa, so4
    2. 3014076Domain d2xlnb_: 2xln B: [207269]
      automated match to d1w79a1
      complexed with co, ewa, so4
    3. 3014077Domain d2xlnc_: 2xln C: [207270]
      automated match to d1w79a1
      complexed with co, ewa, so4
    4. 3014078Domain d2xlnd_: 2xln D: [207271]
      automated match to d1w79a1
      complexed with co, ewa, so4
  9. Domain(s) for 2y4a:
    1. 3014103Domain d2y4aa_: 2y4a A: [207469]
      automated match to d2wked_
      complexed with bh6, mg, so4
    2. 3014104Domain d2y4ab_: 2y4a B: [207470]
      automated match to d2wked_
      complexed with bh6, mg, so4
    3. 3014105Domain d2y4ac_: 2y4a C: [207471]
      automated match to d2wked_
      complexed with bh6, mg, so4
    4. 3014106Domain d2y4ad_: 2y4a D: [207472]
      automated match to d2wked_
      complexed with bh6, mg, so4
  10. Domain(s) for 2y55:
    1. 3014071Domain d2y55a_: 2y55 A: [207473]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
    2. 3014072Domain d2y55b_: 2y55 B: [207474]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
    3. 3014073Domain d2y55c_: 2y55 C: [207475]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
    4. 3014074Domain d2y55d_: 2y55 D: [207476]
      automated match to d2wked_
      complexed with acn, fp5, mg, so4
  11. Domain(s) for 2y59:
    1. 3014091Domain d2y59a_: 2y59 A: [207477]
      automated match to d2wked_
      complexed with mg, so4, za3
    2. 3014092Domain d2y59b_: 2y59 B: [207478]
      automated match to d2wked_
      complexed with mg, so4, za3
    3. 3014093Domain d2y59c_: 2y59 C: [207479]
      automated match to d2wked_
      complexed with mg, so4, za3
    4. 3014094Domain d2y59d_: 2y59 D: [207480]
      automated match to d2wked_
      complexed with mg, so4, za3
  12. Domain(s) for 2y5o:
    1. 3014035Domain d2y5oa_: 2y5o A: [304699]
      automated match to d1w79a1
      complexed with 33d, acn, fp5, mes, mg, so4
    2. 3014036Domain d2y5ob_: 2y5o B: [304700]
      automated match to d1w79a1
      complexed with 33d, acn, fp5, mes, mg, so4
    3. 3014037Domain d2y5oc_: 2y5o C: [304701]
      automated match to d1w79a1
      complexed with 33d, acn, fp5, mes, mg, so4
    4. 3014038Domain d2y5od_: 2y5o D: [304702]
      automated match to d1w79a1
      complexed with 33d, acn, fp5, mes, mg, so4
  13. Domain(s) for 2y5r:
    1. 3014095Domain d2y5ra_: 2y5r A: [304703]
      automated match to d1w79a1
      complexed with bo7
    2. 3014096Domain d2y5rb_: 2y5r B: [304704]
      automated match to d1w79a1
      complexed with bo7
    3. 3014097Domain d2y5rc_: 2y5r C: [304705]
      automated match to d1w79a1
      complexed with bo7
    4. 3014098Domain d2y5rd_: 2y5r D: [304706]
      automated match to d1w79a1
      complexed with bo7
  14. Domain(s) for 3zcz:
    1. 3014067Domain d3zcza_: 3zcz A: [201286]
      automated match to d3zczd_
      complexed with mg, so4, tfr
    2. 3014068Domain d3zczb_: 3zcz B: [201287]
      automated match to d3zczd_
      complexed with mg, so4, tfr
    3. 3014069Domain d3zczc_: 3zcz C: [201288]
      automated match to d3zczd_
      complexed with mg, so4, tfr
    4. 3014070Domain d3zczd_: 3zcz D: [196732]
      automated match to d1w79a1
      complexed with mg, so4, tfr
  15. Domain(s) for 3zvt:
    1. 3014087Domain d3zvta_: 3zvt A: [250871]
      automated match to d1w79b1
      complexed with b07, mg, so4
    2. 3014088Domain d3zvtb_: 3zvt B: [250872]
      automated match to d1w79b1
      complexed with b07, mg, so4
    3. 3014089Domain d3zvtc_: 3zvt C: [250873]
      automated match to d1w79b1
      complexed with b07, mg, so4
    4. 3014090Domain d3zvtd_: 3zvt D: [250874]
      automated match to d1w79b1
      complexed with b07, mg, so4
  16. Domain(s) for 3zvw:
    1. 3014031Domain d3zvwa_: 3zvw A: [218543]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
    2. 3014032Domain d3zvwb_: 3zvw B: [218544]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
    3. 3014033Domain d3zvwc_: 3zvw C: [218545]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
    4. 3014034Domain d3zvwd_: 3zvw D: [218546]
      automated match to d2wked_
      complexed with 33d, acn, fp5, mes, mg, so4
  17. Domain(s) for 4b4x:
    1. 3014079Domain d4b4xa_: 4b4x A: [219324]
      automated match to d2wked_
      complexed with hqz, mg, so4
    2. 3014080Domain d4b4xb_: 4b4x B: [219325]
      automated match to d2wked_
      complexed with hqz, mg, so4
    3. 3014081Domain d4b4xc_: 4b4x C: [219326]
      automated match to d2wked_
      complexed with hqz, mg, so4
    4. 3014082Domain d4b4xd_: 4b4x D: [219327]
      automated match to d2wked_
      complexed with hqz, mg, so4
  18. Domain(s) for 4b4z:
    1. 3014043Domain d4b4za_: 4b4z A: [219328]
      automated match to d2wked_
      complexed with bsf, mg, so4
    2. 3014044Domain d4b4zb_: 4b4z B: [219329]
      automated match to d2wked_
      complexed with bsf, mg, so4
    3. 3014045Domain d4b4zc_: 4b4z C: [219330]
      automated match to d2wked_
      complexed with bsf, mg, so4
    4. 3014046Domain d4b4zd_: 4b4z D: [219331]
      automated match to d2wked_
      complexed with bsf, mg, so4
  19. Domain(s) for 4ben:
    1. 3014039Domain d4bena_: 4ben A: [201615]
      automated match to d2wked_
      complexed with gol, im2, mes, mg, so4
    2. 3014040Domain d4benb_: 4ben B: [196660]
      automated match to d1w79a1
      complexed with gol, im2, mes, mg, so4
    3. 3014041Domain d4benc_: 4ben C: [201616]
      automated match to d2wked_
      complexed with gol, im2, mes, mg, so4
    4. 3014042Domain d4bend_: 4ben D: [201617]
      automated match to d2wked_
      complexed with gol, im2, mes, mg, so4

More info for Species Actinomadura sp. [TaxId:1989] from e.3.1.3 D-alanyl-D-alanine carboxypeptidase Dac

Timeline for Species Actinomadura sp. [TaxId:1989] from e.3.1.3 D-alanyl-D-alanine carboxypeptidase Dac: