SCOPe 2.04: Protein: Spike protein S1

Lineage for Protein: Spike protein S1

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
automatically mapped to Pfam PF09408
Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
part of PfamB PB000266
Protein Spike protein S1 [143589] (1 species)

Species:

SARS coronavirus [TaxId:227859] [143590] (8 PDB entries)
Uniprot P59594 320-502! Uniprot P59594 321-512! Uniprot P59594 323-502
1. Domains for 2ajf:
  1. Domain d2ajfe1: 2ajf E:323-502 [126884]
    Other proteins in same PDB: d2ajfa_, d2ajfb_
    complexed with cl, nag, zn
  2. Domain d2ajff_: 2ajf F: [126885]
    Other proteins in same PDB: d2ajfa_, d2ajfb_
    automated match to d2dd8s1
    complexed with cl, nag, zn
2. Domain for 2dd8:
  - Domain d2dd8s1: 2dd8 S:321-512 [131393]
    Other proteins in same PDB: d2dd8h1, d2dd8h2, d2dd8l1, d2dd8l2
    complexed with nag, po4
3. Domains for 2ghv:
  1. Domain d2ghvc1: 2ghv C:320-502 [135214]
  2. Domain d2ghve_: 2ghv E: [135215]
    automated match to d2dd8s1
4. Domains for 2ghw:
  1. Domain d2ghwa_: 2ghw A: [135216]
    Other proteins in same PDB: d2ghwb1, d2ghwb2, d2ghwd1, d2ghwd2
    automated match to d2dd8s1
    complexed with cl
  2. Domain d2ghwc_: 2ghw C: [135217]
    Other proteins in same PDB: d2ghwb1, d2ghwb2, d2ghwd1, d2ghwd2
    automated match to d2dd8s1
    complexed with cl
5. Domains for 3bgf:
  1. Domain d3bgfa_: 3bgf A: [245370]
    Other proteins in same PDB: d3bgfc1, d3bgfc2, d3bgfl1, d3bgfl2
    automated match to d2ghwa_
  2. Domain d3bgfs_: 3bgf S: [245375]
    Other proteins in same PDB: d3bgfc1, d3bgfc2, d3bgfl1, d3bgfl2
    automated match to d2ghwa_
6. Domains for 3d0g:
  1. Domain d3d0ge_: 3d0g E: [157170]
    Other proteins in same PDB: d3d0ga_, d3d0gb_
    automated match to d2ajfe1
    complexed with cl, nag, ndg, zn
  2. Domain d3d0gf_: 3d0g F: [157171]
    Other proteins in same PDB: d3d0ga_, d3d0gb_
    automated match to d2ajfe1
    complexed with cl, nag, ndg, zn
7. Domains for 3d0h:
  1. Domain d3d0he_: 3d0h E: [245599]
    Other proteins in same PDB: d3d0ha_, d3d0hb_
    automated match to d2ghwa_
    complexed with cl, nag, ndg, zn
  2. Domain d3d0hf_: 3d0h F: [245600]
    Other proteins in same PDB: d3d0ha_, d3d0hb_
    automated match to d2ghwa_
    complexed with cl, nag, ndg, zn
8. Domains for 3d0i:
  1. Domain d3d0ie_: 3d0i E: [173602]
    Other proteins in same PDB: d3d0ia_, d3d0ib_
    automated match to d2ajfe1
    complexed with cl, nag, ndg, zn
  2. Domain d3d0if_: 3d0i F: [173603]
    Other proteins in same PDB: d3d0ia_, d3d0ib_
    automated match to d2ajfe1
    complexed with cl, nag, ndg, zn

More info for Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like

Timeline for Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like:

Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like first appeared in SCOP 1.73
Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like appears in SCOPe 2.03
Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like appears in SCOPe 2.05
Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like appears in the current release, SCOPe 2.08