Lineage for Protein: Spike protein S1

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2566909Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
    core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
  4. 2566910Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) (S)
    automatically mapped to Pfam PF09408
  5. 2566911Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
    part of PfamB PB000266
  6. 2566912Protein Spike protein S1 [143589] (3 species)

Species:

  1. 2566913SARS coronavirus [TaxId:227859] [143590] (13 PDB entries)
    Uniprot P59594 320-502! Uniprot P59594 321-512! Uniprot P59594 323-502
    1. Domains for 2ajf:
      1. 2566923Domain d2ajfe1: 2ajf E:323-502 [126884]
        Other proteins in same PDB: d2ajfa_, d2ajfb_
        complexed with cl, nag, zn
      2. 2566924Domain d2ajff_: 2ajf F: [126885]
        Other proteins in same PDB: d2ajfa_, d2ajfb_
        automated match to d2dd8s1
        complexed with cl, nag, zn
    2. Domain for 2dd8:
    3. Domains for 2ghv:
      1. 2566914Domain d2ghvc1: 2ghv C:320-502 [135214]
      2. 2566915Domain d2ghve_: 2ghv E: [135215]
        automated match to d2dd8s1
    4. Domains for 2ghw:
      1. 2566917Domain d2ghwa_: 2ghw A: [135216]
        Other proteins in same PDB: d2ghwb1, d2ghwb2, d2ghwd1, d2ghwd2
        automated match to d2dd8s1
        complexed with cl
      2. 2566918Domain d2ghwc_: 2ghw C: [135217]
        Other proteins in same PDB: d2ghwb1, d2ghwb2, d2ghwd1, d2ghwd2
        automated match to d2dd8s1
        complexed with cl
    5. Domains for 3bgf:
      1. 2566929Domain d3bgfa_: 3bgf A: [245370]
        Other proteins in same PDB: d3bgfc1, d3bgfc2, d3bgfl1, d3bgfl2
        automated match to d2ghwa_
      2. 2566930Domain d3bgfs_: 3bgf S: [245375]
        Other proteins in same PDB: d3bgfc1, d3bgfc2, d3bgfl1, d3bgfl2
        automated match to d2ghwa_
    6. Domains for 3d0g:
      1. 2566925Domain d3d0ge_: 3d0g E: [157170]
        Other proteins in same PDB: d3d0ga_, d3d0gb_
        automated match to d2ajfe1
        complexed with cl, nag, ndg, zn
      2. 2566926Domain d3d0gf_: 3d0g F: [157171]
        Other proteins in same PDB: d3d0ga_, d3d0gb_
        automated match to d2ajfe1
        complexed with cl, nag, ndg, zn
    7. Domains for 3d0h:
      1. 2566935Domain d3d0he_: 3d0h E: [245599]
        Other proteins in same PDB: d3d0ha_, d3d0hb_
        automated match to d2ghwa_
        complexed with cl, nag, ndg, zn
      2. 2566936Domain d3d0hf_: 3d0h F: [245600]
        Other proteins in same PDB: d3d0ha_, d3d0hb_
        automated match to d2ghwa_
        complexed with cl, nag, ndg, zn
    8. Domains for 3d0i:
      1. 2566927Domain d3d0ie_: 3d0i E: [173602]
        Other proteins in same PDB: d3d0ia_, d3d0ib_
        automated match to d2ajfe1
        complexed with cl, nag, ndg, zn
      2. 2566928Domain d3d0if_: 3d0i F: [173603]
        Other proteins in same PDB: d3d0ia_, d3d0ib_
        automated match to d2ajfe1
        complexed with cl, nag, ndg, zn
    9. Domains for 3sci:
      1. 2566919Domain d3scie_: 3sci E: [239714]
        Other proteins in same PDB: d3scia_, d3scib_
        automated match to d2dd8s1
        complexed with cl, zn
      2. 2566920Domain d3scif_: 3sci F: [239715]
        Other proteins in same PDB: d3scia_, d3scib_
        automated match to d2dd8s1
        complexed with cl, zn
    10. Domains for 3scj:
      1. 2566921Domain d3scje_: 3scj E: [249345]
        Other proteins in same PDB: d3scja_, d3scjb_
        automated match to d2ghwc_
        complexed with cl, zn
      2. 2566922Domain d3scjf_: 3scj F: [249346]
        Other proteins in same PDB: d3scja_, d3scjb_
        automated match to d2ghwc_
        complexed with cl, zn
    11. Domains for 3sck:
      1. 2566933Domain d3scke_: 3sck E: [249349]
        Other proteins in same PDB: d3scka_, d3sckb_
        automated match to d3d0ie_
        complexed with cl, zn
      2. 2566934Domain d3sckf_: 3sck F: [249350]
        Other proteins in same PDB: d3scka_, d3sckb_
        automated match to d3d0ie_
        complexed with cl, zn
    12. Domains for 3scl:
      1. 2566931Domain d3scle_: 3scl E: [249353]
        Other proteins in same PDB: d3scla_, d3sclb_
        automated match to d2ghwa_
        complexed with cl, zn
      2. 2566932Domain d3sclf_: 3scl F: [249354]
        Other proteins in same PDB: d3scla_, d3sclb_
        automated match to d2ghwa_
        complexed with cl, zn
    13. Domains for 6waq:
      1. 3083189Domain d6waqb1: 6waq B:321-502 [383251]
        Other proteins in same PDB: d6waqa1, d6waqa2, d6waqb2, d6waqc1, d6waqc2, d6waqd2
        automated match to d2ghwa_
        complexed with nag
      2. 3083205Domain d6waqd1: 6waq D:320-502 [383267]
        Other proteins in same PDB: d6waqa1, d6waqa2, d6waqb2, d6waqc1, d6waqc2, d6waqd2
        automated match to d2ghwa_
        complexed with nag
  2. 3081931Bat sars-like coronavirus [TaxId:1508227] [381993] (1 PDB entry)
  3. 3082230Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (16 PDB entries)
    1. Domain for 6lzg:
    2. Domain for 6m0j:
    3. Domains for 6m17:
      1. 3082950Domain d6m17e_: 6m17 E: [383012]
        automated match to d2dd8s1
        complexed with leu, nag, zn
      2. 3083128Domain d6m17f_: 6m17 F: [383190]
        automated match to d2dd8s1
        complexed with leu, nag, zn
    4. Domain for 6w41:
    5. Domains for 6xc2:
      1. 3089082Domain d6xc2a_: 6xc2 A: [389144]
        Other proteins in same PDB: d6xc2l1, d6xc2l2, d6xc2y1, d6xc2y2
        automated match to d2dd8s1
        complexed with nag
      2. 3089110Domain d6xc2z_: 6xc2 Z: [389172]
        Other proteins in same PDB: d6xc2l1, d6xc2l2, d6xc2y1, d6xc2y2
        automated match to d2dd8s1
        complexed with nag
    6. Domain for 6xc3:
    7. Domains for 6xc4:
      1. 3089000Domain d6xc4z_: 6xc4 Z: [389062]
        Other proteins in same PDB: d6xc4l1, d6xc4l2, d6xc4y1, d6xc4y2
        automated match to d2dd8s1
        complexed with nag
      2. 3089132Domain d6xc4a_: 6xc4 A: [389194]
        Other proteins in same PDB: d6xc4l1, d6xc4l2, d6xc4y1, d6xc4y2
        automated match to d2dd8s1
        complexed with nag
    8. Domain for 6xc7:
    9. Domain for 6xe1:
    10. Domains for 6yla:
      1. 3083800Domain d6ylae_: 6yla E: [383862]
        Other proteins in same PDB: d6ylac1, d6ylac2, d6ylal1, d6ylal2
        automated match to d2dd8s1
        complexed with 1pe, dms, mli, nag, pg0
      2. 3083885Domain d6ylaa_: 6yla A: [383947]
        Other proteins in same PDB: d6ylac1, d6ylac2, d6ylal1, d6ylal2
        automated match to d2dd8s1
        complexed with 1pe, dms, mli, nag, pg0
    11. Domain for 6yz5:
    12. Domains for 6z2m:
      1. 3086979Domain d6z2ma_: 6z2m A: [387041]
        Other proteins in same PDB: d6z2mc1, d6z2mc2, d6z2md_, d6z2mf_, d6z2ml1, d6z2ml2
        automated match to d2dd8s1
        complexed with nag
      2. 3087027Domain d6z2me_: 6z2m E: [387089]
        Other proteins in same PDB: d6z2mc1, d6z2mc2, d6z2md_, d6z2mf_, d6z2ml1, d6z2ml2
        automated match to d2dd8s1
        complexed with nag
    13. Domain for 6zcz:
    14. Domain for 7bwj:
    15. Domain for 7bz5:
    16. Domains for 7c01:
      1. 3086034Domain d7c01b_: 7c01 B: [386096]
        Other proteins in same PDB: d7c01d1, d7c01d2, d7c01l1, d7c01l2
        automated match to d2dd8s1
        complexed with nag
      2. 3086102Domain d7c01a_: 7c01 A: [386164]
        Other proteins in same PDB: d7c01d1, d7c01d2, d7c01l1, d7c01l2
        automated match to d2dd8s1
        complexed with nag

More info for Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like

Timeline for Protein Spike protein S1 from d.318.1.1: SARS receptor-binding domain-like: