SCOPe 2.02: Protein: Coronavirus nucleocapsid protein

Lineage for Protein: Coronavirus nucleocapsid protein

Root: SCOPe 2.02
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.254: Nucleocapsid protein dimerization domain [103067] (1 superfamily)
dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta
Superfamily d.254.1: Nucleocapsid protein dimerization domain [103068] (2 families)
Family d.254.1.2: Coronavirus nucleocapsid protein [143508] (2 proteins)
C-terminal part of Pfam PF00937
Protein Coronavirus nucleocapsid protein [143509] (2 species)

Species:

Avian infectious bronchitis virus [TaxId:11120] [143510] (3 PDB entries)
Uniprot P32923 222-333! Uniprot P32923 226-332! Uniprot Q4ZJS4 218-326
different strains
1. Domains for 2ca1:
  1. Domain d2ca1a1: 2ca1 A:218-326 [130147]
  2. Domain d2ca1b_: 2ca1 B: [130148]
    automated match to d2ca1a1
2. Domains for 2ge7:
  1. Domain d2ge7a1: 2ge7 A:8-114 [135049]
    protein/RNA complex
  2. Domain d2ge7b_: 2ge7 B: [135050]
    automated match to d2ge8a1
    protein/RNA complex
3. Domains for 2ge8:
  1. Domain d2ge8a1: 2ge8 A:4-115 [135051]
    protein/RNA complex
  2. Domain d2ge8b_: 2ge8 B: [135052]
    automated match to d2ge8a1
    protein/RNA complex
  3. Domain d2ge8c_: 2ge8 C: [135053]
    automated match to d2ge8a1
    protein/RNA complex
  4. Domain d2ge8d_: 2ge8 D: [135054]
    automated match to d2ge8a1
    protein/RNA complex
  5. Domain d2ge8f_: 2ge8 F: [135055]
    automated match to d2ge8a1
    protein/RNA complex
  6. Domain d2ge8g_: 2ge8 G: [135056]
    automated match to d2ge8a1
    protein/RNA complex
  7. Domain d2ge8i_: 2ge8 I: [135057]
    automated match to d2ge8a1
    protein/RNA complex
  8. Domain d2ge8j_: 2ge8 J: [135058]
    automated match to d2ge8a1
    protein/RNA complex
SARS coronavirus [TaxId:227859] [143511] (3 PDB entries)
Uniprot P59595 270-366
1. Domain for 2cjr:
  - Domain d2cjra1: 2cjr A:251-365 [146399]
    Other proteins in same PDB: d2cjrb_, d2cjrc_, d2cjrd_, d2cjre_, d2cjrf_, d2cjrg_, d2cjrh_
2. Domains for 2gib:
  1. Domain d2giba1: 2gib A:270-366 [135225]
    complexed with so4
  2. Domain d2gibb1: 2gib B:274-366 [135226]
    automatically matched to 2GIB A:270-366
    complexed with so4
3. Domains for 2jw8:
  1. Domain d2jw8a1: 2jw8 A:251-365 [148226]
    automatically matched to 2CJR A:251-365
  2. Domain d2jw8b1: 2jw8 B:251-365 [148227]
    automatically matched to 2CJR A:251-365

More info for Protein Coronavirus nucleocapsid protein from d.254.1.2: Coronavirus nucleocapsid protein

Timeline for Protein Coronavirus nucleocapsid protein from d.254.1.2: Coronavirus nucleocapsid protein:

Protein Coronavirus nucleocapsid protein from d.254.1.2: Coronavirus nucleocapsid protein first appeared in SCOP 1.73
Protein Coronavirus nucleocapsid protein from d.254.1.2: Coronavirus nucleocapsid protein appears in SCOPe 2.01
Protein Coronavirus nucleocapsid protein from d.254.1.2: Coronavirus nucleocapsid protein appears in SCOPe 2.03
Protein Coronavirus nucleocapsid protein from d.254.1.2: Coronavirus nucleocapsid protein appears in the current release, SCOPe 2.08