Lineage for Species: Bacillus subtilis [TaxId: 1423]

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2166092Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2166093Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2166168Family c.97.1.2: Deoxycytidylate deaminase-like [89800] (8 proteins)
    strand 5 is parallel to strand 4
  6. 2166219Protein Riboflavin biosynthesis protein RibD [142837] (2 species)
  7. 2166220Species Bacillus subtilis [TaxId:1423] [142838] (4 PDB entries)
    Uniprot P17618 1-145

PDB entries in Species: Bacillus subtilis [TaxId: 1423]:

  1. Domain(s) for 2b3z:
    1. 2166221Domain d2b3za2: 2b3z A:1-145 [127808]
      Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
      complexed with zn
    2. 2166222Domain d2b3zb2: 2b3z B:1-145 [127810]
      Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
      automated match to d2b3za2
      complexed with zn
    3. 2166223Domain d2b3zc2: 2b3z C:1-145 [127812]
      Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
      automated match to d2b3za2
      complexed with zn
    4. 2166224Domain d2b3zd2: 2b3z D:1-145 [127814]
      Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
      automated match to d2b3za2
      complexed with zn
  2. Domain(s) for 2d5n:
    1. 2166233Domain d2d5na2: 2d5n A:1-145 [131274]
      Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
      automated match to d2b3za2
      complexed with ndp, zn
    2. 2166234Domain d2d5nb2: 2d5n B:1-145 [131276]
      Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
      automated match to d2b3za2
      complexed with ndp, zn
    3. 2166235Domain d2d5nc2: 2d5n C:1-145 [131278]
      Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
      automated match to d2b3za2
      complexed with ndp, zn
    4. 2166236Domain d2d5nd2: 2d5n D:1-145 [131280]
      Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
      automated match to d2b3za2
      complexed with ndp, zn
  3. Domain(s) for 3ex8:
    1. 2166229Domain d3ex8a1: 3ex8 A:1-145 [209689]
      Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
      automated match to d2b3za2
      complexed with aif, zn
    2. 2166230Domain d3ex8b1: 3ex8 B:1-145 [209691]
      Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
      automated match to d2b3za2
      complexed with aif, zn
    3. 2166231Domain d3ex8c1: 3ex8 C:1-145 [209693]
      Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
      automated match to d2b3za2
      complexed with aif, zn
    4. 2166232Domain d3ex8d1: 3ex8 D:1-145 [209695]
      Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
      automated match to d2b3za2
      complexed with aif, zn
  4. Domain(s) for 4g3m:
    1. 2166225Domain d4g3ma1: 4g3m A:1-145 [221681]
      Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
      automated match to d2b3za2
      complexed with ai9, aof, zn
    2. 2166226Domain d4g3mb1: 4g3m B:1-145 [221683]
      Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
      automated match to d2b3za2
      complexed with ai9, aof, zn
    3. 2166227Domain d4g3mc1: 4g3m C:1-145 [221685]
      Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
      automated match to d2b3za2
      complexed with ai9, aof, zn
    4. 2166228Domain d4g3md1: 4g3m D:1-145 [221687]
      Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
      automated match to d2b3za2
      complexed with ai9, aof, zn

More info for Species Bacillus subtilis [TaxId:1423] from c.97.1.2 Riboflavin biosynthesis protein RibD

Timeline for Species Bacillus subtilis [TaxId:1423] from c.97.1.2 Riboflavin biosynthesis protein RibD: