Lineage for Protein: Riboflavin biosynthesis protein RibD

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2147804Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2147805Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2147880Family c.97.1.2: Deoxycytidylate deaminase-like [89800] (8 protein domains)
    strand 5 is parallel to strand 4
  6. 2147931Protein Riboflavin biosynthesis protein RibD [142837] (2 species)

Species:

  1. 2147932Bacillus subtilis [TaxId:1423] [142838] (4 PDB entries)
    Uniprot P17618 1-145
    1. Domains for 2b3z:
      1. 2147933Domain d2b3za2: 2b3z A:1-145 [127808]
        Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
        complexed with zn
      2. 2147934Domain d2b3zb2: 2b3z B:1-145 [127810]
        Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
        automated match to d2b3za2
        complexed with zn
      3. 2147935Domain d2b3zc2: 2b3z C:1-145 [127812]
        Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
        automated match to d2b3za2
        complexed with zn
      4. 2147936Domain d2b3zd2: 2b3z D:1-145 [127814]
        Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
        automated match to d2b3za2
        complexed with zn
    2. Domains for 2d5n:
      1. 2147945Domain d2d5na2: 2d5n A:1-145 [131274]
        Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
        automated match to d2b3za2
        complexed with ndp, zn
      2. 2147946Domain d2d5nb2: 2d5n B:1-145 [131276]
        Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
        automated match to d2b3za2
        complexed with ndp, zn
      3. 2147947Domain d2d5nc2: 2d5n C:1-145 [131278]
        Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
        automated match to d2b3za2
        complexed with ndp, zn
      4. 2147948Domain d2d5nd2: 2d5n D:1-145 [131280]
        Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
        automated match to d2b3za2
        complexed with ndp, zn
    3. Domains for 3ex8:
      1. 2147941Domain d3ex8a1: 3ex8 A:1-145 [209689]
        Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
        automated match to d2b3za2
        complexed with aif, zn
      2. 2147942Domain d3ex8b1: 3ex8 B:1-145 [209691]
        Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
        automated match to d2b3za2
        complexed with aif, zn
      3. 2147943Domain d3ex8c1: 3ex8 C:1-145 [209693]
        Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
        automated match to d2b3za2
        complexed with aif, zn
      4. 2147944Domain d3ex8d1: 3ex8 D:1-145 [209695]
        Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
        automated match to d2b3za2
        complexed with aif, zn
    4. Domains for 4g3m:
      1. 2147937Domain d4g3ma1: 4g3m A:1-145 [221681]
        Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
        automated match to d2b3za2
        complexed with ai9, aof, zn
      2. 2147938Domain d4g3mb1: 4g3m B:1-145 [221683]
        Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
        automated match to d2b3za2
        complexed with ai9, aof, zn
      3. 2147939Domain d4g3mc1: 4g3m C:1-145 [221685]
        Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
        automated match to d2b3za2
        complexed with ai9, aof, zn
      4. 2147940Domain d4g3md1: 4g3m D:1-145 [221687]
        Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
        automated match to d2b3za2
        complexed with ai9, aof, zn
  2. 2147949Thermotoga maritima [TaxId:2336] [142839] (1 PDB entry)
    Uniprot Q9X2E8 1-147

More info for Protein Riboflavin biosynthesis protein RibD from c.97.1.2: Deoxycytidylate deaminase-like

Timeline for Protein Riboflavin biosynthesis protein RibD from c.97.1.2: Deoxycytidylate deaminase-like: