SCOPe 2.08: Protein: Riboflavin biosynthesis protein RibD

Lineage for Protein: Riboflavin biosynthesis protein RibD

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families)
contains extra C-terminal strand 5, order 21345
Family c.97.1.2: Deoxycytidylate deaminase-like [89800] (8 proteins)
strand 5 is parallel to strand 4
Protein Riboflavin biosynthesis protein RibD [142837] (2 species)

Species:

Bacillus subtilis [TaxId:1423] [142838] (4 PDB entries)
Uniprot P17618 1-145
1. Domains for 2b3z:
  1. Domain d2b3za2: 2b3z A:1-145 [127808]
    Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
    complexed with zn
  2. Domain d2b3zb2: 2b3z B:1-145 [127810]
    Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
    automated match to d2b3za2
    complexed with zn
  3. Domain d2b3zc2: 2b3z C:1-145 [127812]
    Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
    automated match to d2b3za2
    complexed with zn
  4. Domain d2b3zd2: 2b3z D:1-145 [127814]
    Other proteins in same PDB: d2b3za1, d2b3zb1, d2b3zc1, d2b3zd1, d2b3zd3
    automated match to d2b3za2
    complexed with zn
2. Domains for 2d5n:
  1. Domain d2d5na2: 2d5n A:1-145 [131274]
    Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
    automated match to d2b3za2
    complexed with ndp, zn
  2. Domain d2d5nb2: 2d5n B:1-145 [131276]
    Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
    automated match to d2b3za2
    complexed with ndp, zn
  3. Domain d2d5nc2: 2d5n C:1-145 [131278]
    Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
    automated match to d2b3za2
    complexed with ndp, zn
  4. Domain d2d5nd2: 2d5n D:1-145 [131280]
    Other proteins in same PDB: d2d5na1, d2d5nb1, d2d5nc1, d2d5nd1, d2d5nd3
    automated match to d2b3za2
    complexed with ndp, zn
3. Domains for 3ex8:
  1. Domain d3ex8a1: 3ex8 A:1-145 [209689]
    Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
    automated match to d2b3za2
    complexed with aif, zn
  2. Domain d3ex8b1: 3ex8 B:1-145 [209691]
    Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
    automated match to d2b3za2
    complexed with aif, zn
  3. Domain d3ex8c1: 3ex8 C:1-145 [209693]
    Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
    automated match to d2b3za2
    complexed with aif, zn
  4. Domain d3ex8d1: 3ex8 D:1-145 [209695]
    Other proteins in same PDB: d3ex8a2, d3ex8b2, d3ex8c2, d3ex8d2, d3ex8d3
    automated match to d2b3za2
    complexed with aif, zn
4. Domains for 4g3m:
  1. Domain d4g3ma1: 4g3m A:1-145 [221681]
    Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
    automated match to d2b3za2
    complexed with ai9, aof, zn
  2. Domain d4g3mb1: 4g3m B:1-145 [221683]
    Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
    automated match to d2b3za2
    complexed with ai9, aof, zn
  3. Domain d4g3mc1: 4g3m C:1-145 [221685]
    Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
    automated match to d2b3za2
    complexed with ai9, aof, zn
  4. Domain d4g3md1: 4g3m D:1-145 [221687]
    Other proteins in same PDB: d4g3ma2, d4g3ma3, d4g3mb2, d4g3mb3, d4g3mc2, d4g3mc3, d4g3md2, d4g3md3
    automated match to d2b3za2
    complexed with ai9, aof, zn
Thermotoga maritima [TaxId:2336] [142839] (1 PDB entry)
Uniprot Q9X2E8 1-147
- Domain for 2hxv:
  - Domain d2hxva2: 2hxv A:1-147 [136860]
    Other proteins in same PDB: d2hxva1, d2hxva3
    complexed with cl, gol, ndp, zn

More info for Protein Riboflavin biosynthesis protein RibD from c.97.1.2: Deoxycytidylate deaminase-like

Timeline for Protein Riboflavin biosynthesis protein RibD from c.97.1.2: Deoxycytidylate deaminase-like:

Protein Riboflavin biosynthesis protein RibD from c.97.1.2: Deoxycytidylate deaminase-like first appeared in SCOP 1.73
Protein Riboflavin biosynthesis protein RibD from c.97.1.2: Deoxycytidylate deaminase-like appears in SCOPe 2.07