Lineage for Protein: Riboflavin biosynthesis protein RibD

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2136820Fold c.71: Dihydrofolate reductase-like [53596] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 8 strands, order 34251687; strand 8 is antiparallel to the rest
  4. 2136821Superfamily c.71.1: Dihydrofolate reductase-like [53597] (3 families) (S)
  5. 2137213Family c.71.1.2: RibD C-terminal domain-like [142701] (3 protein domains)
    Pfam PF01872
  6. 2137217Protein Riboflavin biosynthesis protein RibD [142702] (2 species)

Species:

  1. 2137218Bacillus subtilis [TaxId:1423] [142703] (4 PDB entries)
    Uniprot P17618 146-359
    1. Domains for 2b3z:
      1. 2137219Domain d2b3za1: 2b3z A:146-359 [127807]
        Other proteins in same PDB: d2b3za2, d2b3zb2, d2b3zc2, d2b3zd2, d2b3zd3
        complexed with zn
      2. 2137220Domain d2b3zb1: 2b3z B:146-359 [127809]
        Other proteins in same PDB: d2b3za2, d2b3zb2, d2b3zc2, d2b3zd2, d2b3zd3
        automated match to d2b3za1
        complexed with zn
      3. 2137221Domain d2b3zc1: 2b3z C:146-359 [127811]
        Other proteins in same PDB: d2b3za2, d2b3zb2, d2b3zc2, d2b3zd2, d2b3zd3
        automated match to d2b3za1
        complexed with zn
      4. 2137222Domain d2b3zd1: 2b3z D:146-359 [127813]
        Other proteins in same PDB: d2b3za2, d2b3zb2, d2b3zc2, d2b3zd2, d2b3zd3
        automated match to d2b3za1
        complexed with zn
    2. Domains for 2d5n:
      1. 2137231Domain d2d5na1: 2d5n A:146-359 [131273]
        Other proteins in same PDB: d2d5na2, d2d5nb2, d2d5nc2, d2d5nd2, d2d5nd3
        automated match to d2b3za1
        complexed with ndp, zn
      2. 2137232Domain d2d5nb1: 2d5n B:146-359 [131275]
        Other proteins in same PDB: d2d5na2, d2d5nb2, d2d5nc2, d2d5nd2, d2d5nd3
        automated match to d2b3za1
        complexed with ndp, zn
      3. 2137233Domain d2d5nc1: 2d5n C:146-359 [131277]
        Other proteins in same PDB: d2d5na2, d2d5nb2, d2d5nc2, d2d5nd2, d2d5nd3
        automated match to d2b3za1
        complexed with ndp, zn
      4. 2137234Domain d2d5nd1: 2d5n D:146-359 [131279]
        Other proteins in same PDB: d2d5na2, d2d5nb2, d2d5nc2, d2d5nd2, d2d5nd3
        automated match to d2b3za1
        complexed with ndp, zn
    3. Domains for 3ex8:
      1. 2137227Domain d3ex8a2: 3ex8 A:146-359 [209690]
        Other proteins in same PDB: d3ex8a1, d3ex8b1, d3ex8c1, d3ex8d1, d3ex8d3
        automated match to d2b3za1
        complexed with aif, zn
      2. 2137228Domain d3ex8b2: 3ex8 B:146-359 [209692]
        Other proteins in same PDB: d3ex8a1, d3ex8b1, d3ex8c1, d3ex8d1, d3ex8d3
        automated match to d2b3za1
        complexed with aif, zn
      3. 2137229Domain d3ex8c2: 3ex8 C:146-359 [209694]
        Other proteins in same PDB: d3ex8a1, d3ex8b1, d3ex8c1, d3ex8d1, d3ex8d3
        automated match to d2b3za1
        complexed with aif, zn
      4. 2137230Domain d3ex8d2: 3ex8 D:146-359 [209696]
        Other proteins in same PDB: d3ex8a1, d3ex8b1, d3ex8c1, d3ex8d1, d3ex8d3
        automated match to d2b3za1
        complexed with aif, zn
    4. Domains for 4g3m:
      1. 2137223Domain d4g3ma2: 4g3m A:146-360 [221682]
        Other proteins in same PDB: d4g3ma1, d4g3ma3, d4g3mb1, d4g3mb3, d4g3mc1, d4g3mc3, d4g3md1, d4g3md3
        automated match to d2b3za1
        complexed with ai9, aof, zn
      2. 2137224Domain d4g3mb2: 4g3m B:146-359 [221684]
        Other proteins in same PDB: d4g3ma1, d4g3ma3, d4g3mb1, d4g3mb3, d4g3mc1, d4g3mc3, d4g3md1, d4g3md3
        automated match to d2b3za1
        complexed with ai9, aof, zn
      3. 2137225Domain d4g3mc2: 4g3m C:146-359 [221686]
        Other proteins in same PDB: d4g3ma1, d4g3ma3, d4g3mb1, d4g3mb3, d4g3mc1, d4g3mc3, d4g3md1, d4g3md3
        automated match to d2b3za1
        complexed with ai9, aof, zn
      4. 2137226Domain d4g3md2: 4g3m D:146-359 [221688]
        Other proteins in same PDB: d4g3ma1, d4g3ma3, d4g3mb1, d4g3mb3, d4g3mc1, d4g3mc3, d4g3md1, d4g3md3
        automated match to d2b3za1
        complexed with ai9, aof, zn
  2. 2137235Thermotoga maritima [TaxId:2336] [142704] (1 PDB entry)
    Uniprot Q9X2E8 148-345

More info for Protein Riboflavin biosynthesis protein RibD from c.71.1.2: RibD C-terminal domain-like

Timeline for Protein Riboflavin biosynthesis protein RibD from c.71.1.2: RibD C-terminal domain-like: