Lineage for Species: Shigella flexneri [TaxId: 623]
- Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loopsSuperfamily c.56.5: Zn-dependent exopeptidases [53187] (10 families) 
core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the restFamily c.56.5.4: Bacterial dinuclear zinc exopeptidases [53204] (18 proteins) 
Protein Aminopeptidase YpdE [142520] (1 species) Species Shigella flexneri [TaxId:623] [142521] (1 PDB entry)
Uniprot Q83K87 1-66,148-345
hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)
PDB entry in Species: Shigella flexneri [TaxId: 623]:
- Domain(s) for 1ylo:
Domain d1yloa2: 1ylo A:1-66,A:148-345 [123660]
Other proteins in same PDB: d1yloa1, d1yloa3, d1ylob1, d1ylob3, d1yloc1, d1yloc3, d1ylod1, d1ylod3, d1yloe1, d1yloe3, d1ylof1, d1ylof3
complexed with zn
Domain d1ylob2: 1ylo B:1-66,B:148-345 [123662]
Other proteins in same PDB: d1yloa1, d1yloa3, d1ylob1, d1ylob3, d1yloc1, d1yloc3, d1ylod1, d1ylod3, d1yloe1, d1yloe3, d1ylof1, d1ylof3
automated match to d1yloa2
complexed with zn
Domain d1yloc2: 1ylo C:1-66,C:148-345 [123664]
Other proteins in same PDB: d1yloa1, d1yloa3, d1ylob1, d1ylob3, d1yloc1, d1yloc3, d1ylod1, d1ylod3, d1yloe1, d1yloe3, d1ylof1, d1ylof3
automated match to d1yloa2
complexed with zn
Domain d1ylod2: 1ylo D:1-66,D:148-345 [123666]
Other proteins in same PDB: d1yloa1, d1yloa3, d1ylob1, d1ylob3, d1yloc1, d1yloc3, d1ylod1, d1ylod3, d1yloe1, d1yloe3, d1ylof1, d1ylof3
automated match to d1yloa2
complexed with zn
Domain d1yloe2: 1ylo E:1-66,E:148-345 [123668]
Other proteins in same PDB: d1yloa1, d1yloa3, d1ylob1, d1ylob3, d1yloc1, d1yloc3, d1ylod1, d1ylod3, d1yloe1, d1yloe3, d1ylof1, d1ylof3
automated match to d1yloa2
complexed with zn
Domain d1ylof2: 1ylo F:1-66,F:148-345 [123670]
Other proteins in same PDB: d1yloa1, d1yloa3, d1ylob1, d1ylob3, d1yloc1, d1yloc3, d1ylod1, d1ylod3, d1yloe1, d1yloe3, d1ylof1, d1ylof3
automated match to d1yloa2
complexed with zn
More info for Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE
Timeline for Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE:
- Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE first appeared in SCOP 1.73
- Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE appears in SCOPe 2.07