Lineage for Species: Oxalobacter formigenes [TaxId: 847]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108260Family c.36.1.5: Pyruvate oxidase and decarboxylase Pyr module [88724] (8 protein domains)
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpha/beta domain of Rossmann-like topology
    automatically mapped to Pfam PF02776
  6. 2108352Protein Oxalyl-CoA decarboxylase [142205] (1 species)
  7. 2108353Species Oxalobacter formigenes [TaxId:847] [142206] (6 PDB entries)
    Uniprot P40149 7-194

PDB entries in Species: Oxalobacter formigenes [TaxId: 847]:

  1. Domain(s) for 2c31:
    1. 2108356Domain d2c31a2: 2c31 A:7-194 [129705]
      Other proteins in same PDB: d2c31a1, d2c31a3, d2c31b1, d2c31b3
      complexed with adp, mg, tzd
    2. 2108357Domain d2c31b2: 2c31 B:7-194 [129708]
      Other proteins in same PDB: d2c31a1, d2c31a3, d2c31b1, d2c31b3
      automated match to d2c31a2
      complexed with adp, mg, tzd
  2. Domain(s) for 2ji6:
    1. 2108358Domain d2ji6a2: 2ji6 A:7-194 [148057]
      Other proteins in same PDB: d2ji6a1, d2ji6a3, d2ji6b1, d2ji6b3
      automated match to d2c31a2
      complexed with adp, b3p, mg, oxk, pge, tpw
    2. 2108359Domain d2ji6b2: 2ji6 B:7-194 [148060]
      Other proteins in same PDB: d2ji6a1, d2ji6a3, d2ji6b1, d2ji6b3
      automated match to d2c31a2
      complexed with adp, b3p, mg, oxk, pge, tpw
  3. Domain(s) for 2ji7:
    1. 2108354Domain d2ji7a2: 2ji7 A:7-194 [148063]
      Other proteins in same PDB: d2ji7a1, d2ji7a3, d2ji7b1, d2ji7b3
      automated match to d2c31a2
      complexed with adp, b3p, mg, oxt, pge
    2. 2108355Domain d2ji7b2: 2ji7 B:7-194 [148066]
      Other proteins in same PDB: d2ji7a1, d2ji7a3, d2ji7b1, d2ji7b3
      automated match to d2c31a2
      complexed with adp, b3p, mg, oxt, pge
  4. Domain(s) for 2ji8:
    1. 2108362Domain d2ji8a2: 2ji8 A:7-194 [148069]
      Other proteins in same PDB: d2ji8a1, d2ji8a3, d2ji8b1, d2ji8b3
      automated match to d2c31a2
      complexed with adp, fyn, mg, pge, tpp
    2. 2108363Domain d2ji8b2: 2ji8 B:7-194 [148072]
      Other proteins in same PDB: d2ji8a1, d2ji8a3, d2ji8b1, d2ji8b3
      automated match to d2c31a2
      complexed with adp, fyn, mg, pge, tpp
  5. Domain(s) for 2ji9:
    1. 2108360Domain d2ji9a2: 2ji9 A:7-194 [148075]
      Other proteins in same PDB: d2ji9a1, d2ji9a3, d2ji9b1, d2ji9b3
      automated match to d2c31a2
      complexed with adp, b3p, mg, tpw
    2. 2108361Domain d2ji9b2: 2ji9 B:7-194 [148078]
      Other proteins in same PDB: d2ji9a1, d2ji9a3, d2ji9b1, d2ji9b3
      automated match to d2c31a2
      complexed with adp, b3p, mg, tpw
  6. Domain(s) for 2jib:
    1. 2108364Domain d2jiba2: 2jib A:7-194 [148081]
      Other proteins in same PDB: d2jiba1, d2jiba3, d2jibb1, d2jibb3
      automated match to d2c31a2
      complexed with adp, coa, mg, pge, tpp
    2. 2108365Domain d2jibb2: 2jib B:7-194 [148084]
      Other proteins in same PDB: d2jiba1, d2jiba3, d2jibb1, d2jibb3
      automated match to d2c31a2
      complexed with adp, coa, mg, pge, tpp

More info for Species Oxalobacter formigenes [TaxId:847] from c.36.1.5 Oxalyl-CoA decarboxylase

Timeline for Species Oxalobacter formigenes [TaxId:847] from c.36.1.5 Oxalyl-CoA decarboxylase: