SCOPe 2.08: Species: Pyrococcus horikoshii [TaxId: 53953]

Lineage for Species: Pyrococcus horikoshii [TaxId: 53953]

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.34: SH3-like barrel [50036] (21 superfamilies)
barrel, partly opened; n*=4, S*=8; meander
the last strand is interrupted by a turn of 3-10 helix
Superfamily b.34.1: C-terminal domain of transcriptional repressors [50037] (4 families)
the N-terminal domains of these repressors bind DNA
Family b.34.1.1: Biotin repressor (BirA) [50038] (2 proteins)
automatically mapped to Pfam PF02237
Protein Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain [141186] (1 species)
Species Pyrococcus horikoshii [TaxId:53953] [141187] (27 PDB entries)
Uniprot O57883 189-235

PDB entries in Species: Pyrococcus horikoshii [TaxId: 53953]:

Domain(s) for 1wnl:
1. Domain d1wnla1: 1wnl A:189-235 [121094]
  Other proteins in same PDB: d1wnla2, d1wnlb2
  complexed with adp, gol
2. Domain d1wnlb1: 1wnl B:189-235 [121096]
  Other proteins in same PDB: d1wnla2, d1wnlb2
  automated match to d1wnla1
  complexed with adp, gol
Domain(s) for 1wpy:
1. Domain d1wpya1: 1wpy A:189-235 [121157]
  Other proteins in same PDB: d1wpya2, d1wpyb2
  automated match to d1wnla1
  complexed with btn
2. Domain d1wpyb1: 1wpy B:189-235 [121159]
  Other proteins in same PDB: d1wpya2, d1wpyb2
  automated match to d1wnla1
  complexed with btn
Domain(s) for 1wq7:
1. Domain d1wq7a1: 1wq7 A:189-235 [121165]
  Other proteins in same PDB: d1wq7a2, d1wq7b2
  automated match to d1wnla1
2. Domain d1wq7b1: 1wq7 B:189-235 [121167]
  Other proteins in same PDB: d1wq7a2, d1wq7b2
  automated match to d1wnla1
Domain(s) for 1wqw:
1. Domain d1wqwa1: 1wqw A:189-235 [121179]
  Other proteins in same PDB: d1wqwa2, d1wqwb2
  automated match to d1wnla1
  complexed with bt5
2. Domain d1wqwb1: 1wqw B:189-235 [121181]
  Other proteins in same PDB: d1wqwa2, d1wqwb2
  automated match to d1wnla1
  complexed with bt5
Domain(s) for 1x01:
1. Domain d1x01a1: 1x01 A:189-235 [121537]
  Other proteins in same PDB: d1x01a2, d1x01b2
  automated match to d1wnla1
  complexed with acy, atp, po4
2. Domain d1x01b1: 1x01 B:189-235 [121539]
  Other proteins in same PDB: d1x01a2, d1x01b2
  automated match to d1wnla1
  complexed with acy, atp, po4
Domain(s) for 2deq:
1. Domain d2deqa2: 2deq A:189-235 [230663]
  Other proteins in same PDB: d2deqa1, d2deqb1
  automated match to d2zgwa1
  complexed with bt5; mutant
2. Domain d2deqb2: 2deq B:189-234 [230664]
  Other proteins in same PDB: d2deqa1, d2deqb1
  automated match to d2zgwa1
  complexed with bt5; mutant
Domain(s) for 2djz:
1. Domain d2djza2: 2djz A:189-235 [230667]
  Other proteins in same PDB: d2djza1, d2djzb1
  automated match to d2zgwa1
  complexed with bt5; mutant
2. Domain d2djzb2: 2djz B:189-232 [230669]
  Other proteins in same PDB: d2djza1, d2djzb1
  automated match to d2zgwa1
  complexed with bt5; mutant
Domain(s) for 2dkg:
1. Domain d2dkga1: 2dkg A:189-235 [131551]
  Other proteins in same PDB: d2dkga2, d2dkgb2
  automated match to d1wnla1
  complexed with bt5, mg, pop
2. Domain d2dkgb1: 2dkg B:189-235 [131553]
  Other proteins in same PDB: d2dkga2, d2dkgb2
  automated match to d1wnla1
  complexed with bt5, mg, pop
Domain(s) for 2dth:
1. Domain d2dtha1: 2dth A:189-235 [131713]
  Other proteins in same PDB: d2dtha2, d2dthb2
  automated match to d1wnla1
  complexed with adp, btn
2. Domain d2dthb1: 2dth B:189-235 [131715]
  Other proteins in same PDB: d2dtha2, d2dthb2
  automated match to d1wnla1
  complexed with adp, btn
Domain(s) for 2dti:
1. Domain d2dtia1: 2dti A:189-235 [131717]
  Other proteins in same PDB: d2dtia2, d2dtib2
  automated match to d1wnla1
  complexed with bt5, mn, pop
2. Domain d2dtib1: 2dti B:189-235 [131719]
  Other proteins in same PDB: d2dtia2, d2dtib2
  automated match to d1wnla1
  complexed with bt5, mn, pop
Domain(s) for 2dto:
1. Domain d2dtoa1: 2dto A:189-235 [131721]
  Other proteins in same PDB: d2dtoa2, d2dtob2
  automated match to d1wnla1
  complexed with atp, btn
2. Domain d2dtob1: 2dto B:189-235 [131723]
  Other proteins in same PDB: d2dtoa2, d2dtob2
  automated match to d1wnla1
  complexed with atp, btn
Domain(s) for 2dve:
1. Domain d2dvea2: 2dve A:189-235 [230661]
  Other proteins in same PDB: d2dvea1, d2dveb1
  automated match to d2zgwa1
  complexed with bt5; mutant
2. Domain d2dveb2: 2dve B:189-235 [230662]
  Other proteins in same PDB: d2dvea1, d2dveb1
  automated match to d2zgwa1
  complexed with bt5; mutant
Domain(s) for 2dxt:
1. Domain d2dxta2: 2dxt A:189-235 [230671]
  Other proteins in same PDB: d2dxta1, d2dxtb1
  automated match to d2zgwa1
  complexed with atp, btn; mutant
2. Domain d2dxtb2: 2dxt B:189-235 [230673]
  Other proteins in same PDB: d2dxta1, d2dxtb1
  automated match to d2zgwa1
  complexed with atp, btn; mutant
Domain(s) for 2dxu:
1. Domain d2dxua2: 2dxu A:189-235 [230675]
  Other proteins in same PDB: d2dxua1, d2dxub1
  automated match to d2zgwa1
  complexed with bt5; mutant
2. Domain d2dxub2: 2dxu B:189-226 [230677]
  Other proteins in same PDB: d2dxua1, d2dxub1
  automated match to d2zgwa1
  complexed with bt5; mutant
Domain(s) for 2dz9:
1. Domain d2dz9a2: 2dz9 A:189-235 [241658]
  Other proteins in same PDB: d2dz9a1, d2dz9b1
  automated match to d2dxta2
  complexed with bt5; mutant
2. Domain d2dz9b2: 2dz9 B:189-235 [241660]
  Other proteins in same PDB: d2dz9a1, d2dz9b1
  automated match to d2dxta2
  complexed with bt5; mutant
Domain(s) for 2dzc:
1. Domain d2dzca2: 2dzc A:189-235 [241662]
  Other proteins in same PDB: d2dzca1, d2dzcb1
  automated match to d2dxua2
  mutant
2. Domain d2dzcb2: 2dzc B:189-235 [241664]
  Other proteins in same PDB: d2dzca1, d2dzcb1
  automated match to d2dxua2
  mutant
Domain(s) for 2e10:
1. Domain d2e10a2: 2e10 A:189-235 [241675]
  Other proteins in same PDB: d2e10a1, d2e10b1
  automated match to d2dvea2
  mutant
2. Domain d2e10b2: 2e10 B:189-235 [241677]
  Other proteins in same PDB: d2e10a1, d2e10b1
  automated match to d2dvea2
  mutant
Domain(s) for 2e1h:
1. Domain d2e1ha2: 2e1h A:189-235 [241679]
  Other proteins in same PDB: d2e1ha1, d2e1hb1
  automated match to d2deqa2
  mutant
2. Domain d2e1hb2: 2e1h B:189-235 [241681]
  Other proteins in same PDB: d2e1ha1, d2e1hb1
  automated match to d2deqa2
  mutant
Domain(s) for 2e3y:
1. Domain d2e3ya2: 2e3y A:189-235 [303754]
  Other proteins in same PDB: d2e3ya1, d2e3yb1
  automated match to d2zgwa1
  complexed with adn, btn; mutant
2. Domain d2e3yb2: 2e3y B:189-235 [303756]
  Other proteins in same PDB: d2e3ya1, d2e3yb1
  automated match to d2zgwa1
  complexed with adn, btn; mutant
Domain(s) for 2e41:
1. Domain d2e41a1: 2e41 A:189-235 [146679]
  Other proteins in same PDB: d2e41a2, d2e41b2
  automated match to d2zgwa1
  complexed with btx; mutant
2. Domain d2e41b1: 2e41 B:189-232 [146681]
  Other proteins in same PDB: d2e41a2, d2e41b2
  automated match to d2zgwa1
  complexed with btx; mutant
Domain(s) for 2e64:
1. Domain d2e64a1: 2e64 A:189-235 [146697]
  Other proteins in same PDB: d2e64a2, d2e64b2
  automated match to d2zgwa1
  mutant
2. Domain d2e64b1: 2e64 B:189-235 [146699]
  Other proteins in same PDB: d2e64a2, d2e64b2
  automated match to d2zgwa1
  mutant
Domain(s) for 2e65:
1. Domain d2e65a2: 2e65 A:189-235 [241691]
  Other proteins in same PDB: d2e65a1, d2e65b1
  automated match to d2dxta2
  mutant
2. Domain d2e65b2: 2e65 B:189-235 [241693]
  Other proteins in same PDB: d2e65a1, d2e65b1
  automated match to d2dxta2
  mutant
Domain(s) for 2ejf:
1. Domain d2ejfa1: 2ejf A:189-235 [146871]
  Other proteins in same PDB: d2ejfa2, d2ejfb2
  automated match to d2zgwa1
  complexed with adn, btn, gol; mutant
2. Domain d2ejfb1: 2ejf B:189-231 [146873]
  Other proteins in same PDB: d2ejfa2, d2ejfb2
  automated match to d2zgwa1
  complexed with adn, btn, gol; mutant
Domain(s) for 2ejg:
1. Domain d2ejga2: 2ejg A:189-235 [241769]
  Other proteins in same PDB: d2ejga1, d2ejgb1
  automated match to d2dxua2
  complexed with adn, btn; mutant
2. Domain d2ejgb2: 2ejg B:189-231 [241771]
  Other proteins in same PDB: d2ejga1, d2ejgb1
  automated match to d2dxua2
  complexed with adn, btn; mutant
Domain(s) for 2fyk:
1. Domain d2fyka1: 2fyk A:189-235 [134374]
  Other proteins in same PDB: d2fyka2, d2fykb2
  automated match to d1wnla1
  complexed with adp, btn
2. Domain d2fykb1: 2fyk B:189-235 [134376]
  Other proteins in same PDB: d2fyka2, d2fykb2
  automated match to d1wnla1
  complexed with adp, btn
Domain(s) for 2hni:
1. Domain d2hnia2: 2hni A:189-235 [242047]
  Other proteins in same PDB: d2hnia1, d2hnib1
  automated match to d2djza2
  complexed with acy; mutant
2. Domain d2hnib2: 2hni B:189-235 [242049]
  Other proteins in same PDB: d2hnia1, d2hnib1
  automated match to d2djza2
  complexed with acy; mutant
Domain(s) for 2zgw:
1. Domain d2zgwa1: 2zgw A:189-235 [154421]
  Other proteins in same PDB: d2zgwa2, d2zgwb2
  complexed with adn, btn; mutant
2. Domain d2zgwb1: 2zgw B:189-235 [154423]
  Other proteins in same PDB: d2zgwa2, d2zgwb2
  automated match to d2zgwa1
  complexed with adn, btn; mutant

More info for Species Pyrococcus horikoshii [TaxId:53953] from b.34.1.1 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain

Timeline for Species Pyrococcus horikoshii [TaxId:53953] from b.34.1.1 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain:

Species Pyrococcus horikoshii [TaxId:53953] from b.34.1.1 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain first appeared in SCOP 1.73, called Species Archaeon Pyrococcus horikoshii [TaxId:53953] from b.34.1.1 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain
Species Pyrococcus horikoshii [TaxId:53953] from b.34.1.1 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain appears in SCOPe 2.07