Lineage for Protein: DNA repair endonuclease XPF

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1998615Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 1998807Superfamily a.60.2: RuvA domain 2-like [47781] (7 families) (S)
    duplication: contains two helix-hairpin-helix (HhH) motifs
  5. 1998863Family a.60.2.5: Hef domain-like [140629] (4 protein domains)
    helicase/nuclease domain; forms homo and heterodimers; probably includes the Excinuclease UvrC C-terminal domain ((81795), that contains a single NMR structure of a monomeric truncated domain, 1kft)
  6. 1998873Protein DNA repair endonuclease XPF [140634] (2 species)

Species:

  1. 1998874Aeropyrum pernix [TaxId:56636] [140635] (2 PDB entries)
    Uniprot Q9YC15 160-229
    1. Domains for 2bgw:
      1. 1998875Domain d2bgwa1: 2bgw A:160-229 [128500]
        Other proteins in same PDB: d2bgwa2, d2bgwb2
        protein/DNA complex; complexed with mg, so4
      2. 1998876Domain d2bgwb1: 2bgw B:160-228 [128502]
        Other proteins in same PDB: d2bgwa2, d2bgwb2
        automated match to d2bgwa1
        protein/DNA complex; complexed with mg, so4
    2. Domains for 2bhn:
      1. 1998877Domain d2bhna1: 2bhn A:160-229 [128534]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
      2. 1998878Domain d2bhnb1: 2bhn B:162-229 [128536]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
      3. 1998879Domain d2bhnc1: 2bhn C:164-229 [128538]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
      4. 1998880Domain d2bhnd1: 2bhn D:160-229 [128540]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
  2. 1998881Human (Homo sapiens) [TaxId:9606] [140636] (4 PDB entries)
    Uniprot Q92889 823-905! Uniprot Q92889 837-898
    1. Domain for 1z00:
    2. Domain for 2a1j:
    3. Domains for 2aq0:
      1. 1998884Domain d2aq0a_: 2aq0 A: [127136]
        automated match to d2aq0a1
      2. 1998885Domain d2aq0b_: 2aq0 B: [127137]
        automated match to d2aq0a1
    4. Domain for 2mut:

More info for Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like

Timeline for Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like: