SCOPe 2.08: Protein: DNA repair endonuclease XPF

Lineage for Protein: DNA repair endonuclease XPF

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.60: SAM domain-like [47768] (17 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.2: RuvA domain 2-like [47781] (7 families)
duplication: contains two helix-hairpin-helix (HhH) motifs

Family a.60.2.5: Hef domain-like [140629] (4 proteins)
helicase/nuclease domain; forms homo and heterodimers; probably includes the Excinuclease UvrC C-terminal domain ((81795), that contains a single NMR structure of a monomeric truncated domain, 1kft)

Protein DNA repair endonuclease XPF [140634] (2 species)

Species:

Aeropyrum pernix [TaxId:56636] [140635] (2 PDB entries)
Uniprot Q9YC15 160-229
1. Domains for 2bgw:
  1. Domain d2bgwa1: 2bgw A:160-229 [128500]
    Other proteins in same PDB: d2bgwa2, d2bgwb2
    protein/DNA complex; complexed with mg, so4
  2. Domain d2bgwb1: 2bgw B:160-228 [128502]
    Other proteins in same PDB: d2bgwa2, d2bgwb2
    automated match to d2bgwa1
    protein/DNA complex; complexed with mg, so4
2. Domains for 2bhn:
  1. Domain d2bhna1: 2bhn A:160-229 [128534]
    Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
    automatically matched to 2BGW A:160-229
  2. Domain d2bhnb1: 2bhn B:162-229 [128536]
    Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
    automatically matched to 2BGW A:160-229
  3. Domain d2bhnc1: 2bhn C:164-229 [128538]
    Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
    automatically matched to 2BGW A:160-229
  4. Domain d2bhnd1: 2bhn D:160-229 [128540]
    Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
    automatically matched to 2BGW A:160-229
Human (Homo sapiens) [TaxId:9606] [140636] (4 PDB entries)
Uniprot Q92889 823-905! Uniprot Q92889 837-898
1. Domain for 1z00:
  - Domain d1z00b1: 1z00 B:823-905 [124295]
    Other proteins in same PDB: d1z00a1, d1z00a2
2. Domain for 2a1j:
  - Domain d2a1ja1: 2a1j A:837-898 [126000]
    Other proteins in same PDB: d2a1jb1, d2a1jb2
    protein/DNA complex; complexed with hg
3. Domains for 2aq0:
  1. Domain d2aq0a_: 2aq0 A: [127136]
    automated match to d2aq0a1
  2. Domain d2aq0b_: 2aq0 B: [127137]
    automated match to d2aq0a1
4. Domain for 2mut:
  - Domain d2mutb1: 2mut B:823-905 [274222]
    Other proteins in same PDB: d2muta1, d2muta2, d2muta3, d2mutb2
    automated match to d2aq0a_
    mutant

More info for Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like

Timeline for Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like:

Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like first appeared in SCOP 1.73
Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like appears in SCOPe 2.07