Lineage for d2yu9b1 (2yu9 B:20-1224)

  1. Root: SCOP 1.75
  2. 883176Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 885463Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
    Multidomain subunits of complex domain organization
  4. 885464Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families) (S)
    The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
  5. 885465Family e.29.1.1: RNA-polymerase beta [64485] (2 proteins)
  6. 885466Protein RBP2 [64491] (1 species)
  7. 885467Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64492] (29 PDB entries)
    Uniprot P08518; part of multichain biological unit
  8. 885495Domain d2yu9b1: 2yu9 B:20-1224 [140065]
    Other proteins in same PDB: d2yu9a1, d2yu9c1, d2yu9c2, d2yu9e1, d2yu9e2, d2yu9f1, d2yu9h1, d2yu9i1, d2yu9i2, d2yu9j1, d2yu9k1, d2yu9l1
    automatically matched to d1i50b_
    complexed with mg, utp, zn

Details for d2yu9b1

PDB Entry: 2yu9 (more details), 3.4 Å

PDB Description: RNA polymerase II elongation complex in 150 mm MG+2 with UTP
PDB Compounds: (B:) DNA-directed RNA polymerase II 140 kDa polypeptide

SCOP Domain Sequences for d2yu9b1:

Sequence, based on SEQRES records: (download)

>d2yu9b1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsrdf

Sequence, based on observed residues (ATOM records): (download)

>d2yu9b1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlieisfgkiyv
tkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyeaidkvfigrlpimlrsknc
ylseatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvae
irsalekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeile
hicydvndwqmlemlkpcvedgfviqdretaldfigrrgtalgikkekriqyakdilqke
flphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfkt
lfkkltkdifrymqrtvelainaktitsglkyalatgnwgeqkkamssragvsqvlnryt
ysstlshlrrtntpiakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmp
iitflsewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpev
smirdirekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytws
sllneglveyidaeeeesiliamqpedlepadvdpakrirvshhattfthceihpsmilg
vaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrame
ylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsi
tetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpisskrdastplrs
tengivdqvlvttnqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpfta
egivpdliinphaipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehg
yqsrgfevmynghtgkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrs
rdgglrfgemerdcmiahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeck
gcdnkidiyqihipyaakllfqelmamnitprlytdrsrdf

SCOP Domain Coordinates for d2yu9b1:

Click to download the PDB-style file with coordinates for d2yu9b1.
(The format of our PDB-style files is described here.)

Timeline for d2yu9b1: