SCOPe 2.08: Domain d2q3ub_: 2q3u B:

Lineage for d2q3ub_ (2q3u B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (3 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein automated matches [190353] (3 species)
   not a true protein

7. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [187181] (3 PDB entries)

8. Domain d2q3ub_: 2q3u B: [139810]
   automated match to d1vkpa_
   complexed with edo, mg, mpo

Details for d2q3ub_

PDB Entry: 2q3u, 1.53 Å

PDB Description: Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At5g08170, agmatine iminohydrolase

PDB Compounds: (B:) agmatine deiminase

SCOPe Domain Sequences for d2q3ub_:

Sequence, based on SEQRES records:

>d2q3ub_ d.126.1.6 (B:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidwnfnawg
gandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknr
nphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddet
dpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtr
laasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihc
itqqqpaept

Sequence, based on observed residues (ATOM records):

>d2q3ub_ d.126.1.6 (B:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandgcy
ndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphmske
qieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqyers
vealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasyvn
fyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqqpa
ept

Timeline for d2q3ub_:

• d2q3ub_ first appeared in SCOP 1.73, called d2q3ub1
  
• d2q3ub_ appears in SCOPe 2.07