SCOPe 2.03: Domain d2pkrd1: 2pkr D:0-148,D:313-333

Lineage for d2pkrd1 (2pkr D:0-148,D:313-333)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.3: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain [51800] (22 proteins)
   family members also share a common alpha+beta fold in C-terminal domain

6. Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [51801] (19 species)

7. Species Spinach (Spinacia oleracea) [TaxId:3562] [69409] (8 PDB entries)
   Uniprot P19866

8. Domain d2pkrd1: 2pkr D:0-148,D:313-333 [139722]
   Other proteins in same PDB: d2pkra2, d2pkrb2, d2pkrc2, d2pkrd2, d2pkrh2, d2pkri2, d2pkrl2, d2pkrm2, d2pkro2, d2pkrp2, d2pkrq2, d2pkrr2
   automatically matched to d1nboa1
   complexed with ndp, so4

Details for d2pkrd1

PDB Entry: 2pkr, 2.4 Å

PDB Description: crystal structure of (a+cte)4 chimeric form of photosyntetic glyceraldehyde-3-phosphate dehydrogenase, complexed with nadp

PDB Compounds: (D:) Glyceraldehyde-3-phosphate dehydrogenase Aor

SCOPe Domain Sequences for d2pkrd1:

Sequence; same for both SEQRES and ATOM records:

>d2pkrd1 c.2.1.3 (D:0-148,D:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
klkvaingfgrigrnflrcwhgrkdspldvvvindtggvkqashllkydsilgtfdadvk
tagdsaisvdgkvikvvsdrnpvnlpwgdmgidlviegtgvfvdrdgagkhlqagakkvl
itapgkgdiptyvvgvneegythadtiisnasXnewgysqrvvdladivankwq

Timeline for d2pkrd1:

• d2pkrd1 first appeared in SCOP 1.73
  
• d2pkrd1 appears in SCOPe 2.02
  
• d2pkrd1 appears in SCOPe 2.04
  
• d2pkrd1 appears in the current release, SCOPe 2.08