Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.1: DNA polymerase I [56673] (4 proteins) |
Protein Family B DNA polymerase [56680] (7 species) |
Species Bacteriophage RB69 [TaxId:12353] [56681] (15 PDB entries) |
Domain d2p5od2: 2p5o D:376-896 [139505] Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1 automatically matched to d1clqa2 complexed with 3dr; mutant |
PDB Entry: 2p5o (more details), 2.8 Å
SCOP Domain Sequences for d2p5od2:
Sequence, based on SEQRES records: (download)
>d2p5od2 e.8.1.1 (D:376-896) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit dlikddvlhwmdytvllektfikplegftsaakldyekkas
>d2p5od2 e.8.1.1 (D:376-896) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqslnemlfraqrtev agmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcg tegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfrem ceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgl etqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisidvlhwmdytvl lektfikplegftsaakldyekkas
Timeline for d2p5od2: