Lineage for d2p5ob2 (2p5o B:376-901)

  1. Root: SCOPe 2.01
  2. 1054197Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 1055706Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 1055707Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 1055708Family e.8.1.1: DNA polymerase I [56673] (4 proteins)
  6. 1055785Protein Family B DNA polymerase [56680] (7 species)
  7. 1055786Species Bacteriophage RB69 [TaxId:12353] [56681] (15 PDB entries)
  8. 1055812Domain d2p5ob2: 2p5o B:376-901 [139501]
    Other proteins in same PDB: d2p5oa1, d2p5ob1, d2p5oc1, d2p5od1
    automatically matched to d1clqa2
    protein/DNA complex

Details for d2p5ob2

PDB Entry: 2p5o (more details), 2.8 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna containing an abasic site analog
PDB Compounds: (B:) DNA polymerase

SCOPe Domain Sequences for d2p5ob2:

Sequence, based on SEQRES records: (download)

>d2p5ob2 e.8.1.1 (B:376-901) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmf

Sequence, based on observed residues (ATOM records): (download)

>d2p5ob2 e.8.1.1 (B:376-901) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
mlfraqrtevagmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierk
vneylnevcgtegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarerme
paidrgfremceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtry
aepklkimgletqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisid
vlhwmdytvllektfikplegftsaakldyekkaslfdmf

SCOPe Domain Coordinates for d2p5ob2:

Click to download the PDB-style file with coordinates for d2p5ob2.
(The format of our PDB-style files is described here.)

Timeline for d2p5ob2: