SCOPe 2.05: Domain d2om9d_: 2om9 D:

Lineage for d2om9d_ (2om9 D:)

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
   multihelical; 3 layers or orthogonally packed helices

4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)

5. Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

6. Protein automated matches [190059] (14 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187214] (138 PDB entries)

8. Domain d2om9d_: 2om9 D: [139145]
   automated match to d3prga_
   complexed with aja

Details for d2om9d_

PDB Entry: 2om9, 2.8 Å

PDB Description: ajulemic acid, a synthetic cannabinoid bound to ppar gamma

PDB Compounds: (D:) Peroxisome proliferator-activated receptor gamma

SCOPe Domain Sequences for d2om9d_:

Sequence, based on SEQRES records:

>d2om9d_ a.123.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
esadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgedkikfkh
itplqeqskevairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheii
ytmlaslmnkdgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlai
fiaviilsgdrpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqiv
tehvqllqvikktetdmslhpllqeiykdl

Sequence, based on observed residues (ATOM records):

>d2om9d_ a.123.1.1 (D:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
esadlralakhlydsyiksfpltkakarailtkspfviydmnslmmgedkikfkhitpke
vairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnk
dgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgd
rpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvi
kktetdmslhpllqeiykdl

Timeline for d2om9d_:

• d2om9d_ first appeared in SCOP 1.73, called d2om9d1
  
• d2om9d_ appears in SCOPe 2.04
  
• d2om9d_ appears in SCOPe 2.06
  
• d2om9d_ appears in the current release, SCOPe 2.08