Lineage for d2nyyc1 (2nyy C:2-111)

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 782637Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 783080Species Mouse (Mus musculus), cluster 2 [TaxId:10090] [88526] (30 PDB entries)
  8. 783097Domain d2nyyc1: 2nyy C:2-111 [138829]
    Other proteins in same PDB: d2nyyc2, d2nyyd1, d2nyyd2
    automatically matched to d1egjl1
    complexed with ca, zn

Details for d2nyyc1

PDB Entry: 2nyy (more details), 2.61 Å

PDB Description: crystal structure of botulinum neurotoxin type a complexed with monoclonal antibody cr1
PDB Compounds: (C:) CR1 monoclonal antibody

SCOP Domain Sequences for d2nyyc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2nyyc1 b.1.1.1 (C:2-111) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}
ivltqspatlslspgeratiscrasesvdsyghsfmqwyqqkpgqaprlliyrasnlepg
iparfsgsgsgtdftltisslepedfavyycqqgnevpftfgqgtkveik

SCOP Domain Coordinates for d2nyyc1:

Click to download the PDB-style file with coordinates for d2nyyc1.
(The format of our PDB-style files is described here.)

Timeline for d2nyyc1:

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Domains from same chain:
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d2nyyc2