Lineage for d2ny1d1 (2ny1 D:3001-3128)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652160Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 652265Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88544] (33 PDB entries)
  8. 652281Domain d2ny1d1: 2ny1 D:3001-3128 [138768]
    Other proteins in same PDB: d2ny1b1, d2ny1b2, d2ny1c1, d2ny1c2, d2ny1d2
    automatically matched to d1rz8b1
    complexed with nag, suc; mutant

Details for d2ny1d1

PDB Entry: 2ny1 (more details), 1.99 Å

PDB Description: hiv-1 gp120 envelope glycoprotein (i109c, t257s, s334a, s375w, q428c) complexed with cd4 and antibody 17b
PDB Compounds: (D:) antibody 17b, heavy chain

SCOP Domain Sequences for d2ny1d1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2ny1d1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

SCOP Domain Coordinates for d2ny1d1:

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Timeline for d2ny1d1: