SCOPe 2.07: Domain d2nvzh1: 2nvz H:2-146

Lineage for d2nvzh1 (2nvz H:2-146)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.40: OB-fold [50198] (17 superfamilies)
   barrel, closed or partly opened n=5, S=10 or S=8; greek-key

4. Superfamily b.40.4: Nucleic acid-binding proteins [50249] (18 families)

5. Family b.40.4.8: RNA polymerase subunit RBP8 [50321] (1 protein)
   duplication; contains tandem repeat of two incomplete OB-folds; forms a single barrel; n=8, S=10
   automatically mapped to Pfam PF03870

6. Protein RNA polymerase subunit RBP8 [50322] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [50323] (36 PDB entries)
   Uniprot P20436

8. Domain d2nvzh1: 2nvz H:2-146 [138700]
   Other proteins in same PDB: d2nvza1, d2nvzb1, d2nvzc1, d2nvzc2, d2nvze1, d2nvze2, d2nvzf1, d2nvzi1, d2nvzi2, d2nvzj1, d2nvzk1, d2nvzl1
   automatically matched to d1a1d__
   protein/DNA complex; protein/RNA complex; complexed with mg, utp, zn

Details for d2nvzh1

PDB Entry: 2nvz, 4.3 Å

PDB Description: rna polymerase ii elongation complex with utp, updated 11/2006

PDB Compounds: (H:) DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide

SCOPe Domain Sequences for d2nvzh1:

Sequence, based on SEQRES records:

>d2nvzh1 b.40.4.8 (H:2-146) RNA polymerase subunit RBP8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
sntlfddifqvsevdpgrynkvcrieaasttqdqckltldinvelfpvaaqdsltvtias
slnledtpandssatrswrppqagdrsladdydyvmygtaykfeevskdliavyysfggl
lmrlegnyrnlnnlkqenayllirr

Sequence, based on observed residues (ATOM records):

>d2nvzh1 b.40.4.8 (H:2-146) RNA polymerase subunit RBP8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
sntlfddifqvsevdpgrynkvcrieaasttqdqckltldinvelfpvaaqdsltvtias
sltrswrppqagdrsladdydyvmygtaykfeevskdliavyysfggllmrlegnyrnln
nlkqenayllirr

Timeline for d2nvzh1:

• d2nvzh1 first appeared in SCOP 1.73
  
• d2nvzh1 appears in SCOPe 2.06
  
• d2nvzh1 appears in the current release, SCOPe 2.08