SCOPe 2.07: Domain d2nvza1: 2nvz A:2-1445

Lineage for d2nvza1 (2nvz A:2-1445)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.2: RNA-polymerase beta-prime [64490] (4 proteins)

6. Protein RBP1 [64486] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64487] (24 PDB entries)
   Uniprot P04050; part of multichain biological unit

8. Domain d2nvza1: 2nvz A:2-1445 [138693]
   Other proteins in same PDB: d2nvzb1, d2nvzc1, d2nvzc2, d2nvze1, d2nvze2, d2nvzf1, d2nvzh1, d2nvzi1, d2nvzi2, d2nvzj1, d2nvzk1, d2nvzl1
   automatically matched to d1i50a_
   protein/DNA complex; protein/RNA complex; complexed with mg, utp, zn

Details for d2nvza1

PDB Entry: 2nvz, 4.3 Å

PDB Description: rna polymerase ii elongation complex with utp, updated 11/2006

PDB Compounds: (A:) DNA-directed RNA polymerase II largest subunit

SCOPe Domain Sequences for d2nvza1:

Sequence, based on SEQRES records:

>d2nvza1 e.29.1.2 (A:2-1445) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsi
drnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnel
mrqalaikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglkl
vgswkkdratgdadepelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpv
ppppvrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhva
tymdndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnlel
dqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskra
gdiqlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspynad
fdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtfi
eldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllspk
dngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhng
fstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvrf
lneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfvd
rtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrrl
vkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvdl
lntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvnir
riiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccl
lrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtl
ntfhfagvaskkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaieht
tlksvtiaseiyydpdprstvipedeeiiqlhfslldeeaeqsfdqqspwllrleldraa
mndkdltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhmlk
kientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvpg
idptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqggl
tsvtrhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtgaf
dvmi

Sequence, based on observed residues (ATOM records):

>d2nvza1 e.29.1.2 (A:2-1445) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
vgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgsi
drnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehnel
mrqalaikdskkrfaaiwtlcktkmvcetdvpselvsrggcgntqptirkdglklvgswl
rvlsteeilnifkhisvkdftslgfnevfsrpewmiltclpvppppvrpsisfnesqrge
ddltfkladilkanisletlehngaphhaieeaesllqfhvatymdndiagqpqagrpvk
sirarlkgkegrirgnlmgkrvdfsartvisgdpnleldqvgvpksiaktltypevvtpy
nidrltqlvrngpnehpgakyvirdsgdridlryskragdiqlqygwkverhimdndpvl
fnrqpslhkmsmmahrvkvipystfrlnlsvtspynadfdgdemnlhvpqseetraelsq
lcavplqivspqsnkpcmgivqdtlcgirkltlrdtfieldqvlnmlywvpdwdgviptp
aiikpkplwsgkqilsvaipngihlqrfdegttllspkdngmliidgqiifgvvekktvg
ssngglihvvtrekgpqvcaklfgniqkvvnfwllhngfstgigdtiadgptmreiteti
aeakkkvldvtkeaqanlltakhgmtlresfednvvrflneardkagrlaevnlkdlnnv
kqmvmagskgsfiniaqmsacvgqqsvegkriafgfvdrtlphfskddyspeskgfvens
ylrgltpqefffhamggreglidtavktaetgyiqrrlvkaledimvhydnttrnslgnv
iqfiygedgmdaahiekqsldtiggsdaafekryrvdllntdhtldpsllesgseilgdl
klqvlldeeykqlvkdrkflrevfvdgeanwplpvnirriiqnaqqtfhidhtkpsdlti
kdivlgvkdlqenllvlrgkneiiqnaqrdavtlfccllrsrlatrrvlqeyrltkqafd
wvlsnieaqflrsvvhpgemvgvlaaqsigepatqmtlntfhfagvaskkvtsgvprlke
ilnvaknmktpsltvylepghaadqeqaklirsaiehttlksvtiaseiyydpdprstvi
pedeeiiqlhfslqqspwllrleldraamndkdltmgqvgerikqtfkndlfviwsedli
ircrvvaeedhmlkkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvle
tdgvnlsevmtvpgidptriytnsfidimevlgieagraalykevynviasdgsyvnyrh
mallvdvmttqggltsvtrhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsen
vilgqmapigtgafdvmi

Timeline for d2nvza1:

• d2nvza1 first appeared in SCOP 1.73
  
• d2nvza1 appears in SCOPe 2.06
  
• d2nvza1 appears in the current release, SCOPe 2.08