Lineage for d2nvyl1 (2nvy L:25-70)

  1. Root: SCOPe 2.08
  2. Class g: Small proteins [56992] (100 folds)
  3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. Superfamily g.41.9: RNA polymerase subunits [63393] (3 families) (S)
  5. Family g.41.9.2: RBP12 subunit of RNA polymerase II [64576] (2 proteins)
  6. Protein RBP12 subunit of RNA polymerase II [64577] (2 species)
  7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64578] (31 PDB entries)
    Uniprot P40422; part of multichain biological unit
  8. Domain d2nvyl1: 2nvy L:25-70 [138692]
    Other proteins in same PDB: d2nvya1, d2nvyb1, d2nvyc1, d2nvyc2, d2nvye1, d2nvye2, d2nvyf1, d2nvyh1, d2nvyi1, d2nvyi2, d2nvyj1, d2nvyk1
    automatically matched to d1i3ql_
    protein/DNA complex; protein/RNA complex; complexed with mn, zn

Details for d2nvyl1

PDB Entry: 2nvy (more details), 3.4 Å

PDB Description: RNA Polymerase II form II in 150 mM Mn+2
PDB Compounds: (L:) DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide

SCOPe Domain Sequences for d2nvyl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2nvyl1 g.41.9.2 (L:25-70) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
atlkyicaecssklslsrtdavrckdcghrillkartkrlvqfear

SCOPe Domain Coordinates for d2nvyl1 are not available.

Timeline for d2nvyl1:

Domains from other chains:
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d2nvya1, d2nvyb1, d2nvyc1, d2nvyc2, d2nvye1, d2nvye2, d2nvyf1, d2nvyh1, d2nvyi1, d2nvyi2, d2nvyj1, d2nvyk1