SCOP 1.73: Domain d2nvyc2: 2nvy C:42-172

Lineage for d2nvyc2 (2nvy C:42-172)

1. Root: SCOP 1.73

2. Class d: Alpha and beta proteins (a+b) [53931] (334 folds)

3. Fold d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
   unusual fold; contains a left-handed beta-alpha-beta unit

4. Superfamily d.181.1: Insert subdomain of RNA polymerase alpha subunit [56553] (1 family)

5. Family d.181.1.1: Insert subdomain of RNA polymerase alpha subunit [56554] (2 proteins)

6. Protein RPB3 [64462] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64463] (24 PDB entries)

8. Domain d2nvyc2: 2nvy C:42-172 [138683]
   Other proteins in same PDB: d2nvya1, d2nvyb1, d2nvyc1, d2nvye1, d2nvye2, d2nvyf1, d2nvyh1, d2nvyi1, d2nvyi2, d2nvyj1, d2nvyk1, d2nvyl1
   automatically matched to d1i3qc2
   complexed with mn, zn

Details for d2nvyc2

PDB Entry: 2nvy, 3.4 Å

PDB Description: RNA Polymerase II form II in 150 mM Mn+2

PDB Compounds: (C:) DNA-directed RNA polymerase II 45 kDa polypeptide

SCOP Domain Sequences for d2nvyc2:

Sequence; same for both SEQRES and ATOM records:

>d2nvyc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ptlaidsvevetnttvladefiahrlgliplqsmdieqleysrdcfcedhcdkcsvvltl
qafgesesttnvyskdlvivsnlmgrnighpiiqdkegngvlicklrkgqelkltcvakk
giakehakwgp

Timeline for d2nvyc2:

• d2nvyc2 is new in SCOP 1.73
  
• d2nvyc2 appears in SCOP 1.75
  
• d2nvyc2 appears in the current release, SCOPe 2.08