SCOP 1.73: Domain d2nvyb1: 2nvy B:20-1224

Lineage for d2nvyb1 (2nvy B:20-1224)

1. Root: SCOP 1.73

2. Class e: Multi-domain proteins (alpha and beta) [56572] (53 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.1: RNA-polymerase beta [64485] (2 proteins)

6. Protein RBP2 [64491] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64492] (24 PDB entries)

8. Domain d2nvyb1: 2nvy B:20-1224 [138681]
   Other proteins in same PDB: d2nvya1, d2nvyc1, d2nvyc2, d2nvye1, d2nvye2, d2nvyf1, d2nvyh1, d2nvyi1, d2nvyi2, d2nvyj1, d2nvyk1, d2nvyl1
   automatically matched to d1i50b_
   complexed with mn, zn

Details for d2nvyb1

PDB Entry: 2nvy, 3.4 Å

PDB Description: RNA Polymerase II form II in 150 mM Mn+2

PDB Compounds: (B:) DNA-directed RNA polymerase II 140 kDa polypeptide

SCOP Domain Sequences for d2nvyb1:

Sequence, based on SEQRES records:

>d2nvyb1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsrdf

Sequence, based on observed residues (ATOM records):

>d2nvyb1 e.29.1.1 (B:20-1224) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlieisfgkiyv
tkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyekvfigrlpimlrskncyls
eatesdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirs
alekgsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehic
ydvndwqmlemlkpcvedgfviqdretaldfigrrgtalgikkekriqyakdilqkeflp
hitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfk
kltkdifrymqrtvelainaktitsglkyalatgnwgagvsqvlnrytysstlshlrrtn
tpiakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmep
ledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelk
iftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyid
aeeeesiliamqpedlepdvdpakrirvshhattfthceihpsmilgvaasiipfpdhnq
sprntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqna
ivaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntl
rmkhgtydkldddgliapgvrvsgedviigkttpisskrdastplrstengivdqvlvtt
nqdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinpha
ipsrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmyngh
tgkklmaqiffgptyyqrlrhmvddkiharargpglrfgemerdcmiahgaasflkerlm
easdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamni
tprlytdrsrdf

Timeline for d2nvyb1:

• d2nvyb1 is new in SCOP 1.73
  
• d2nvyb1 appears in SCOP 1.75
  
• d2nvyb1 appears in the current release, SCOPe 2.08