SCOPe 2.02: Domain d2nvxc2: 2nvx C:42-172

Lineage for d2nvxc2 (2nvx C:42-172)

1. Root: SCOPe 2.02

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
   unusual fold; contains a left-handed beta-alpha-beta unit

4. Superfamily d.181.1: Insert subdomain of RNA polymerase alpha subunit [56553] (1 family)

5. Family d.181.1.1: Insert subdomain of RNA polymerase alpha subunit [56554] (2 proteins)

6. Protein RPB3 [64462] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64463] (24 PDB entries)
   Uniprot P16370; part of multichain biological unit

8. Domain d2nvxc2: 2nvx C:42-172 [138670]
   Other proteins in same PDB: d2nvxa1, d2nvxb1, d2nvxc1, d2nvxe1, d2nvxe2, d2nvxf1, d2nvxh1, d2nvxi1, d2nvxi2, d2nvxj1, d2nvxk1, d2nvxl1
   automatically matched to d1i3qc2
   protein/DNA complex; protein/RNA complex; complexed with dut, mg, zn

Details for d2nvxc2

PDB Entry: 2nvx, 3.6 Å

PDB Description: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP

PDB Compounds: (C:) DNA-directed RNA polymerase II 45 kDa polypeptide

SCOPe Domain Sequences for d2nvxc2:

Sequence; same for both SEQRES and ATOM records:

>d2nvxc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ptlaidsvevetnttvladefiahrlgliplqsmdieqleysrdcfcedhcdkcsvvltl
qafgesesttnvyskdlvivsnlmgrnighpiiqdkegngvlicklrkgqelkltcvakk
giakehakwgp

Timeline for d2nvxc2:

• d2nvxc2 first appeared in SCOP 1.73
  
• d2nvxc2 appears in SCOPe 2.01
  
• d2nvxc2 appears in SCOPe 2.03
  
• d2nvxc2 appears in the current release, SCOPe 2.08