SCOPe 2.06: Domain d2nvub2: 2nvu B:1002-1367

Lineage for d2nvub2 (2nvu B:1002-1367)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)

6. Protein D-maltodextrin-binding protein, MBP [53862] (5 species)
   contains a few additional helices in the C-terminal extension; homologous to thiaminase I

7. Species Escherichia coli [TaxId:562] [53863] (65 PDB entries)
   Uniprot P02928

8. Domain d2nvub2: 2nvu B:1002-1367 [138662]
   Other proteins in same PDB: d2nvua_, d2nvub1, d2nvuc1, d2nvui_, d2nvuj_
   automatically matched to d1mh3a2
   complexed with atp, mg, zn

Details for d2nvub2

PDB Entry: 2nvu, 2.8 Å

PDB Description: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a trapped ubiquitin-like protein activation complex

PDB Compounds: (B:) Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera

SCOPe Domain Sequences for d2nvub2:

Sequence, based on SEQRES records:

>d2nvub2 c.94.1.1 (B:1002-1367) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdii
fwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkd
llpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikd
vgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskv
nygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplg
avalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaa
laaaqt

Sequence, based on observed residues (ATOM records):

>d2nvub2 c.94.1.1 (B:1002-1367) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdii
fwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkd
llpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikd
vgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskv
nygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkval
ksyeeeatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqt

Timeline for d2nvub2:

• d2nvub2 first appeared in SCOP 1.73
  
• d2nvub2 appears in SCOPe 2.05
  
• d2nvub2 appears in SCOPe 2.07
  
• d2nvub2 appears in the current release, SCOPe 2.08