SCOPe 2.05: Domain d2nvtc2: 2nvt C:42-172

Lineage for d2nvtc2 (2nvt C:42-172)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
   unusual fold; contains a left-handed beta-alpha-beta unit

4. Superfamily d.181.1: Insert subdomain of RNA polymerase alpha subunit [56553] (1 family)
   automatically mapped to Pfam PF01000

5. Family d.181.1.1: Insert subdomain of RNA polymerase alpha subunit [56554] (2 proteins)

6. Protein RPB3 [64462] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64463] (24 PDB entries)
   Uniprot P16370; part of multichain biological unit

8. Domain d2nvtc2: 2nvt C:42-172 [138650]
   Other proteins in same PDB: d2nvta1, d2nvtb1, d2nvtc1, d2nvte1, d2nvte2, d2nvtf1, d2nvth1, d2nvti1, d2nvti2, d2nvtj1, d2nvtk1, d2nvtl1
   automatically matched to d1i3qc2
   protein/DNA complex; protein/RNA complex; complexed with g2p, mg, zn

Details for d2nvtc2

PDB Entry: 2nvt, 3.36 Å

PDB Description: RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP

PDB Compounds: (C:) DNA-directed RNA polymerase II 45 kDa polypeptide

SCOPe Domain Sequences for d2nvtc2:

Sequence; same for both SEQRES and ATOM records:

>d2nvtc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ptlaidsvevetnttvladefiahrlgliplqsmdieqleysrdcfcedhcdkcsvvltl
qafgesesttnvyskdlvivsnlmgrnighpiiqdkegngvlicklrkgqelkltcvakk
giakehakwgp

Timeline for d2nvtc2:

• d2nvtc2 first appeared in SCOP 1.73
  
• d2nvtc2 appears in SCOPe 2.04
  
• d2nvtc2 appears in SCOPe 2.06
  
• d2nvtc2 appears in the current release, SCOPe 2.08