SCOPe 2.08: Domain d2nudb1: 2nud B:28-317

Lineage for d2nudb1 (2nud B:28-317)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.45: Antivirulence factor [103382] (1 superfamily)
   contains a helical bundle with a buried helix and an alpha+beta insert domain

4. Superfamily e.45.1: Antivirulence factor [103383] (1 family)
   automatically mapped to Pfam PF05394

5. Family e.45.1.1: Antivirulence factor [103384] (1 protein)

6. Protein Type III effector AvrB [103385] (1 species)

7. Species Pseudomonas syringae [TaxId:317] [103386] (3 PDB entries)

8. Domain d2nudb1: 2nud B:28-317 [138607]
   automatically matched to d1nh1a_
   complexed with etf, trs

Details for d2nudb1

PDB Entry: 2nud, 2.3 Å

PDB Description: The structure of the type III effector AvrB complexed with a high-affinity RIN4 peptide

PDB Compounds: (B:) Avirulence B protein

SCOPe Domain Sequences for d2nudb1:

Sequence, based on SEQRES records:

>d2nudb1 e.45.1.1 (B:28-317) Type III effector AvrB {Pseudomonas syringae [TaxId: 317]}
alpgpsqrqlevydqcligaarwpddssksntpenraycqsmynsirsagdeisrggits
feelwgratewrlsklqrgeplysafasertsdtdavtplvkpyksvlarvvdhedahde
imqdnlfgdlnvkvyrqtaylhgnviplntfrvatdteylrdrvahlrtelgakalkqhl
qrynpdridhtnasylpiikdhlndlyrqaissdlsqaelisliarthwwaasampdqrg
saakaefaaraiasahgielppfrngnvsdieamlsgeeefvekyrslld

Sequence, based on observed residues (ATOM records):

>d2nudb1 e.45.1.1 (B:28-317) Type III effector AvrB {Pseudomonas syringae [TaxId: 317]}
alpgpsqrqlevydqcligaarwpddksntpenraycqsmynsirsagdeisrggitsfe
elwgratewrlskleplysafasertsdtdavtplvkpyksvlarvvdhedahdeimqdn
lfgdlnvkvyrqtaylhgnviplntfrvatdteylrdrvahlrtelgakalkqhlqrynp
dridhtnasylpiikdhlndlyrqaissdlsqaelisliarthwwaasampdqrgsaaka
efaaraiasahgielppfrngnvsdieamlsgeeefvekyrslld

Timeline for d2nudb1:

• d2nudb1 first appeared in SCOP 1.73
  
• d2nudb1 appears in SCOPe 2.07