SCOPe 2.08: Domain d2nuba1: 2nub A:4-314

Lineage for d2nuba1 (2nub A:4-314)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.14: PAZ domain [101690] (2 families)

5. Family b.34.14.1: PAZ domain [101691] (6 proteins)

6. Protein Argonaute homologue Aq_1447 [141227] (1 species)
   includes the N-terminal domain

7. Species Aquifex aeolicus [TaxId:63363] [141228] (2 PDB entries)
   Uniprot O67434 4-314

8. Domain d2nuba1: 2nub A:4-314 [138604]
   Other proteins in same PDB: d2nuba3, d2nuba4
   automatically matched to 1YVU A:4-314
   has additional subdomain(s) that are not in the common domain

Details for d2nuba1

PDB Entry: 2nub, 3.2 Å

PDB Description: Structure of Aquifex aeolicus Argonuate

PDB Compounds: (A:) Argonaute

SCOPe Domain Sequences for d2nuba1:

Sequence, based on SEQRES records:

>d2nuba1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
eallnlyrieyrpkdttftvfkptheiqkeklnkvrwrvflqtglptfrredefwcagkv
ekdtlyltlsngeivelkrvgeeefrgfqnerecqelfrdfltktkvkdkfisdfykkfr
dkitvqgknrkialipevnekvlkseegyfllhldlkfriqpfetlqtllerndfnpkri
rvkpigidfvgrvqdvfkakekgeeffrlcmersthksskkaweellknrelrekaflvv
lekgytypatilkpvltyenledeernevadivrmepgkrlnliryilrryvkalrdygw
yispeeerakg

Sequence, based on observed residues (ATOM records):

>d2nuba1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
eallnlyrieyrpkdttftvfkptheiqkeklnkvrwrvflqtglptfrredefwcagkv
ekdtlyltlsngeivelkrvgeeefrgfqnerecqelfrdfltktkvkdkfisdfykkfr
dkitvqgknrialipevnekvlkseegyfllhldlkfriqpfetlqtllerfnpkrirvk
pigidfvgrvqdvfkakekgeeffrlcmersthksskkaweellknrelrekaflvvlyt
ypatilkpvltyvadivrmepgkrlnliryilrryvkalrdygwyispeeerakg

Timeline for d2nuba1:

• d2nuba1 first appeared in SCOP 1.73
  
• d2nuba1 appears in SCOPe 2.07