Lineage for d2nuba1 (2nub A:4-314)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. Superfamily b.34.14: PAZ domain [101690] (2 families) (S)
  5. Family b.34.14.1: PAZ domain [101691] (6 proteins)
  6. Protein Argonaute homologue Aq_1447 [141227] (1 species)
    includes the N-terminal domain
  7. Species Aquifex aeolicus [TaxId:63363] [141228] (2 PDB entries)
    Uniprot O67434 4-314
  8. Domain d2nuba1: 2nub A:4-314 [138604]
    Other proteins in same PDB: d2nuba3, d2nuba4
    automatically matched to 1YVU A:4-314
    has additional subdomain(s) that are not in the common domain

Details for d2nuba1

PDB Entry: 2nub (more details), 3.2 Å

PDB Description: Structure of Aquifex aeolicus Argonuate
PDB Compounds: (A:) Argonaute

SCOPe Domain Sequences for d2nuba1:

Sequence, based on SEQRES records: (download)

>d2nuba1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
eallnlyrieyrpkdttftvfkptheiqkeklnkvrwrvflqtglptfrredefwcagkv
ekdtlyltlsngeivelkrvgeeefrgfqnerecqelfrdfltktkvkdkfisdfykkfr
dkitvqgknrkialipevnekvlkseegyfllhldlkfriqpfetlqtllerndfnpkri
rvkpigidfvgrvqdvfkakekgeeffrlcmersthksskkaweellknrelrekaflvv
lekgytypatilkpvltyenledeernevadivrmepgkrlnliryilrryvkalrdygw
yispeeerakg

Sequence, based on observed residues (ATOM records): (download)

>d2nuba1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
eallnlyrieyrpkdttftvfkptheiqkeklnkvrwrvflqtglptfrredefwcagkv
ekdtlyltlsngeivelkrvgeeefrgfqnerecqelfrdfltktkvkdkfisdfykkfr
dkitvqgknrialipevnekvlkseegyfllhldlkfriqpfetlqtllerfnpkrirvk
pigidfvgrvqdvfkakekgeeffrlcmersthksskkaweellknrelrekaflvvlyt
ypatilkpvltyvadivrmepgkrlnliryilrryvkalrdygwyispeeerakg

SCOPe Domain Coordinates for d2nuba1 are not available.

Timeline for d2nuba1:

View in 3D
Domains from same chain:
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d2nuba3, d2nuba4