SCOPe 2.04: Domain d2jaab_: 2jaa B:

Lineage for d2jaab_ (2jaa B:)

1. Root: SCOPe 2.04

2. Class a: All alpha proteins [46456] (285 folds)

3. Fold a.250: IpaD-like [140692] (1 superfamily)
   6 helices; bundle, up-and-down; can be divided into two four-helical bundles sharing two helices (3 and 6), which are twice longer than the rest

4. Superfamily a.250.1: IpaD-like [140693] (2 families)

5. Family a.250.1.1: IpaD-like [140694] (3 proteins)
   Pfam PF06511

6. Protein automated matches [191266] (1 species)
   not a true protein

7. Species Shigella flexneri [TaxId:623] [189835] (3 PDB entries)

8. Domain d2jaab_: 2jaa B: [138239]
   Other proteins in same PDB: d2jaaa1
   automated match to d3r9va_

Details for d2jaab_

PDB Entry: 2jaa, 3.1 Å

PDB Description: semet substituted shigella flexneri ipad

PDB Compounds: (B:) invasin ipad

SCOPe Domain Sequences for d2jaab_:

Sequence, based on SEQRES records:

>d2jaab_ a.250.1.1 (B:) automated matches {Shigella flexneri [TaxId: 623]}
ldgdqmishrelwakiansindineqylkvyehavssytqmyqdfsavlsslagwispgg
ndgnsvklqvnslkkaleelkekykdkplypanntvsqeqankwltelggtigkvsqkng
gyvvsinmtpidnmlksldnlggngevvldnakyqawnagfsaedetmknnlqtlvqkys
nansifdnlvkvlsstis

Sequence, based on observed residues (ATOM records):

>d2jaab_ a.250.1.1 (B:) automated matches {Shigella flexneri [TaxId: 623]}
ldgdqmishrelwakiansindineqylkvyehavssytqmyqdfsavlsslagwispvk
lqvnslkkaleelkekykdkplypanntvsqeqankwltelggtigkvsqknggyvvsin
mtpidnmlksldnlnakyqawnagfsaedetmknnlqtlvqkysnansifdnlvkvlsst
is

Timeline for d2jaab_:

• d2jaab_ first appeared in SCOP 1.73, called d2jaab1
  
• d2jaab_ was called d2jaab1 in SCOPe 2.03
  
• d2jaab_ appears in SCOPe 2.05
  
• d2jaab_ appears in the current release, SCOPe 2.08