SCOPe 2.01: Domain d2ja8i2: 2ja8 I:50-117

Lineage for d2ja8i2 (2ja8 I:50-117)

1. Root: SCOPe 2.01

2. Class g: Small proteins [56992] (90 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.3: Zinc beta-ribbon [57783] (5 families)

5. Family g.41.3.1: Transcriptional factor domain [57784] (4 proteins)

6. Protein RBP9 subunit of RNA polymerase II [57787] (2 species)
   contains two differently decorated domains of this fold

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64575] (24 PDB entries)
   Uniprot P27999; part of multichain biological unit

8. Domain d2ja8i2: 2ja8 I:50-117 [138234]
   Other proteins in same PDB: d2ja8a1, d2ja8b1, d2ja8c1, d2ja8c2, d2ja8d1, d2ja8e1, d2ja8e2, d2ja8f1, d2ja8g1, d2ja8g2, d2ja8h1, d2ja8j1, d2ja8k1, d2ja8l1
   automatically matched to d1i3qi2
   protein/DNA complex; protein/RNA complex; complexed with mg, zn

Details for d2ja8i2

PDB Entry: 2ja8, 3.8 Å

PDB Description: cpd lesion containing rna polymerase ii elongation complex d

PDB Compounds: (I:) DNA-directed RNA polymerase II subunit 9

SCOPe Domain Sequences for d2ja8i2:

Sequence; same for both SEQRES and ATOM records:

>d2ja8i2 g.41.3.1 (I:50-117) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
tnigetagvvqdigsdptlprsdrecpkchsrenvffqsqqrrkdtsmvlffvclscshi
ftsdqknk

Timeline for d2ja8i2:

• d2ja8i2 first appeared in SCOP 1.73
  
• d2ja8i2 appears in SCOP 1.75
  
• d2ja8i2 appears in SCOPe 2.02
  
• d2ja8i2 appears in the current release, SCOPe 2.08