SCOPe 2.01: Domain d2j88a_: 2j88 A:

Lineage for d2j88a_ (2j88 A:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.9: Bee venom hyaluronidase [69387] (2 proteins)
   distorted barrel lacks the second strand

6. Protein automated matches [190334] (1 species)
   not a true protein

7. Species Honeybee (Apis mellifera) [TaxId:7460] [187156] (1 PDB entry)

8. Domain d2j88a_: 2j88 A: [138135]
   Other proteins in same PDB: d2j88h1, d2j88l1, d2j88l2
   automated match to d1fcua_

Details for d2j88a_

PDB Entry: 2j88, 2.6 Å

PDB Description: Hyaluronidase in complex with a monoclonal IgG Fab fragment

PDB Compounds: (A:) hyalurononglucosaminidase

SCOPe Domain Sequences for d2j88a_:

Sequence, based on SEQRES records:

>d2j88a_ c.1.8.9 (A:) automated matches {Honeybee (Apis mellifera) [TaxId: 7460]}
efnvywnvptfmchkyglrfeevsekygilqnwmdkfrgeeiailydpgmfpallkdpng
nvvarnggvpqlgnltkhlqvfrdhlinqipdksfpgvgvidfeswrpifrqnwaslqpy
kklsvevvrrehpfwddqrveqeakrrfekygqlfmeetlkaakrmrpaanwgyyaypyc
ynltpnqpsaqceattmqendkmswlfesedvllpsvylrwnltsgervglvggrvkeal
riarqmttsrkkvlpyywykyqdrrdtdlsradleatlrkitdlgadgfiiwgssddint
kakclqfreylnnelgpavkrial

Sequence, based on observed residues (ATOM records):

>d2j88a_ c.1.8.9 (A:) automated matches {Honeybee (Apis mellifera) [TaxId: 7460]}
efnvywnvptfmchkyglrfeevsekygilqnwmdkfrgeeiailydpgmfpallkvvar
nggvpqlgnltkhlqvfrdhlinqipdksfpgvgvidfeswrpifrqnwaslqpykklsv
evvrrehpfwddqrveqeakrrfekygqlfmeetlkaakrmrpaanwgyyaypycynltp
nqpsaqceattmqendkmswlfesedvllpsvylrwnltsgervglvggrvkealriarq
mttsrkkvlpyywykyqdrrdtdlsradleatlrkitdlgadgfiiwgssddintkakcl
qfreylnnelgpavkrial

Timeline for d2j88a_:

• d2j88a_ first appeared in SCOP 1.73, called d2j88a1
  
• d2j88a_ was called d2j88a1 in SCOP 1.75
  
• d2j88a_ appears in SCOPe 2.02
  
• d2j88a_ appears in the current release, SCOPe 2.08