SCOPe 2.07: Domain d2j08a1: 2j08 A:172-420

Lineage for d2j08a1 (2j08 A:172-420)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.99: Cryptochrome/photolyase FAD-binding domain [48172] (1 superfamily)
   multihelical; consists of two all-alpha subdomains

4. Superfamily a.99.1: Cryptochrome/photolyase FAD-binding domain [48173] (2 families)
   automatically mapped to Pfam PF03441

5. Family a.99.1.1: Cryptochrome/photolyase FAD-binding domain [48174] (3 proteins)

6. Protein C-terminal domain of DNA photolyase [48175] (3 species)
   N-terminal domain is alpha/beta and binds a light-harvesting cofactor

7. Species Thermus thermophilus [TaxId:274] [69083] (5 PDB entries)

8. Domain d2j08a1: 2j08 A:172-420 [137893]
   Other proteins in same PDB: d2j08a2
   automated match to d1iqra1
   complexed with cl, fad, irf, po4

Details for d2j08a1

PDB Entry: 2j08, 2.61 Å

PDB Description: thermus dna photolyase with 8-iod-riboflavin antenna chromophore

PDB Compounds: (A:) deoxyribodipyrimidine photo-lyase

SCOPe Domain Sequences for d2j08a1:

Sequence; same for both SEQRES and ATOM records:

>d2j08a1 a.99.1.1 (A:172-420) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]}
lplpepgeeaalaglrafleaklpryaeerdrldgeggsrlspyfalgvlsprlaaweae
rrggegarkwvaellwrdfsyhllyhfpwmaerpldprfqafpwqedealfqawyegktg
vplvdaamrelhatgflsnrarmnaaqfavkhlllpwkrceeafrhllldgdravnlqgw
qwagglgvdaapyfrvfnpvlqgerhdpegrwlkrwapeypsyapkdpvvdleearrryl
rlardlarg

Timeline for d2j08a1:

• d2j08a1 first appeared in SCOP 1.73
  
• d2j08a1 appears in SCOPe 2.06
  
• d2j08a1 appears in the current release, SCOPe 2.08