SCOPe 2.08: Domain d2idbc1: 2idb C:5-325

Lineage for d2idbc1 (2idb C:5-325)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.45: Split barrel-like [50474] (3 superfamilies)
   barrel; n=6, S=10; greek-key

4. Superfamily b.45.1: FMN-binding split barrel [50475] (5 families)
   related to the ferredoxin reductase-like FAD-binding domain

5. Family b.45.1.3: UbiD middle domain-like [141368] (2 proteins)
   N terminal part of Pfam PF01977; overall structural similarity to one subunit of the NADH:FMN oxidoreductase-like family (50482); not known to bind a flavin cofactor; also includes the N-terminal alpha+beta subdomain (~110 residues)

6. Protein 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [141369] (1 species)

7. Species Escherichia coli [TaxId:562] [141370] (1 PDB entry)
   Uniprot P0AAB4 6-325

8. Domain d2idbc1: 2idb C:5-325 [137274]
   Other proteins in same PDB: d2idba2, d2idbb2, d2idbc2
   automated match to d2idba1
   complexed with 1pe, edo

Details for d2idbc1

PDB Entry: 2idb, 2.9 Å

PDB Description: crystal structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (ubid) from escherichia coli, northeast structural genomics target er459.

PDB Compounds: (C:) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

SCOPe Domain Sequences for d2idbc1:

Sequence, based on SEQRES records:

>d2idbc1 b.45.1.3 (C:5-325) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
kyndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlc
nlfgtpkrvamgmgqedvsalrevgkllaflkepeppkgfrdlfdklpqfkqvlnmptkr
lrgapcqqkivsgddvdlnripimtcwpedaaplitwgltvtrgphkerqnlgiyrqqli
gknklimrwlshrggaldyqewcaahpgerfpvsvalgadpatilgavtpvpdtlseyaf
agllrgtktevvkcisndlevpasaeivlegyieqgetapegpygdhtgyynevdsfpvf
tvthitqredaiyhstytgrp

Sequence, based on observed residues (ATOM records):

>d2idbc1 b.45.1.3 (C:5-325) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
kyndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlc
nlfgtpkrvamgmgqedvsalrevgkllaflkkrlrgapcqqkivsgddvdlnripimtc
wpedaaplitwgltvtrgphkerqnlgiyrqqligknklimrwlshrggaldyqewcaah
pgerfpvsvalgadpatilgavtpseyafagllrgtktevvkcisndlevpasaeivleg
yieqgetapegpygdhtgyynevdsfpvftvthitqredaiyhstytgrp

Timeline for d2idbc1:

• d2idbc1 first appeared in SCOP 1.73
  
• d2idbc1 appears in SCOPe 2.07